View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12566_low_3 (Length: 429)
Name: NF12566_low_3
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12566_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Complemental strand, 7687871 - 7687465
Alignment:
| Q |
1 |
aaggttgatgggagaaaatattgatggtcaattgctacatacacccccaaagcctaaaacacatgagtgttctatttgtggattggagtttgcaatagga |
100 |
Q |
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| T |
7687871 |
aaggttgatgggagaaaatattgatggtcaattgctacatacacccccaaagcctaaaacacatgagtgttctatttgtggattggagtttgcaatagga |
7687772 |
T |
|
| Q |
101 |
caagctttaggtggccacatgaggagacatagagctgcaaatatgaacggaaataaaaacatgcacaattctaataatactatgagttgtagcagtggtg |
200 |
Q |
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| T |
7687771 |
caagctttaggtggccacatgaggagacatagagctgcaaatatgaacggaaataaaaacatgcacaattctaataatactatgagttgtagcagtggtg |
7687672 |
T |
|
| Q |
201 |
gtggtggtgatagtagtattgattcttcacaaaagatgaaagctagaaacaagagagttttggttttggatttggatttgaatttgactccctttgagaa |
300 |
Q |
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| T |
7687671 |
gtggtggtgatagtagtatcgattcttcacaaaagatgaaagctagaaacaagagagttttggttttggatttggatttgaatttgactccctttgagaa |
7687572 |
T |
|
| Q |
301 |
tgatatggagtttctgaagattggaaaggcaactgctaatttgattgattattttcattgaatgttttgaatacttcattatttgatttgagagttagtt |
400 |
Q |
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| T |
7687571 |
tgatatggagtttctgaagattggaaaggcaactgctaatttgattgattattttcattgaatgttttgaatacttcattatttgatttgagagttagtt |
7687472 |
T |
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| Q |
401 |
agtgtat |
407 |
Q |
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| T |
7687471 |
agtgtat |
7687465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 32504352 - 32504493
Alignment:
| Q |
48 |
caaagcctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatgaggagacatagagctgcaaatatgaa |
147 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| ||| |||||||| ||||||| || |
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| T |
32504352 |
caaagcctaaaacacttgaatgttctatttgtggattggagtttgcaataggacaagctttaagcggctacatgagaagatatagagcttcaaatataaa |
32504451 |
T |
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| Q |
148 |
cggaaataaaaacatgcacaattctaataatactatgagttgtag |
192 |
Q |
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| T |
32504452 |
cgaaaat---aatatgaacaattttaataatactatgagttgtag |
32504493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 129
Target Start/End: Original strand, 52052789 - 52052864
Alignment:
| Q |
54 |
ctaaaacacatgagtgttctatttgtggattggagtttgcaataggacaagctttaggtggccacatgaggagaca |
129 |
Q |
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||||||| |||| ||||||||||||||||| || |||| ||||||||||||||| ||||| |||||||| ||||| |
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| T |
52052789 |
ctaaaacgcatgcatgttctatttgtggattagaatttggaataggacaagctttgggtggtcacatgagaagaca |
52052864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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