View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12566_low_4 (Length: 287)
Name: NF12566_low_4
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12566_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 273
Target Start/End: Original strand, 1746978 - 1747227
Alignment:
| Q |
16 |
ataatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcacatt |
115 |
Q |
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| T |
1746978 |
ataatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcacctt |
1747077 |
T |
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| Q |
116 |
atataaaaatcttaacatacaagattactaggaaattatggtgcatagagtaataatcaaatacagaaaatctaagttggcattttcaaagnnnnnnnct |
215 |
Q |
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| T |
1747078 |
atataaaaatcttaccatacaagattactaggaaattatggtgcatagagtaataatcaaata--------ctaagttggcattttcaaagaaaaaaact |
1747169 |
T |
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| Q |
216 |
agtttcaatcaatgaagcaaggacaccgaccacttacacgccgacaccgctaataaat |
273 |
Q |
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| T |
1747170 |
agtttcaatcaatgaagcaaggacaccgagcacttacacgccgacaccgctaataaat |
1747227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 206
Target Start/End: Original strand, 6005818 - 6006005
Alignment:
| Q |
18 |
aatcaaatccagatgatacaattcaagggaaagcaaagaaaaacaatgtaatttataactttgtataacacataactaattgcattatattgcacattat |
117 |
Q |
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| T |
6005818 |
aatcaagtccagatgatataattcaagggaaagtgaag-aaaactatataatttaaaacgatgtataacacccaacttgttatattacattgtgcattat |
6005916 |
T |
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| Q |
118 |
ataaaaatcttaacatacaagattactaggaaattatggtgcatagagtaataatcaaatacagaaaatctaagttggcattttcaaag |
206 |
Q |
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| T |
6005917 |
ataaatatgttaccatacacaattaattggcaattatgatgcacagggtgacaaacatatacaacaaatctaagttgacattttcaaag |
6006005 |
T |
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