View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12566_low_6 (Length: 275)
Name: NF12566_low_6
Description: NF12566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12566_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 7475213 - 7475470
Alignment:
| Q |
1 |
tcacaactttgaaatcaatgatgttcggatcatctgcaccaaaaccatacatagatgatttggtatcgaggcagctagtagggggaatacgatggacctc |
100 |
Q |
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| T |
7475213 |
tcacaactttgaaatcaatgatgtttggatcatctgcaccaaaaccatacatagatgatttggtatcgaggcagctagtagggggaatacgatggacctc |
7475312 |
T |
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| Q |
101 |
tctagttgttgggttccaaataattaactcatctagacaactatcgtcgattc-nnnnnnnnnntccagacaactattgttataccaacacaaacctttg |
199 |
Q |
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| T |
7475313 |
tctagttgttgggttccaaataattaactcatctagacaactattgtcgattcaaaataaaaaatctagacaactattgttataccaacacaaacctttg |
7475412 |
T |
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| Q |
200 |
agacagaaaacaccattgaaactaccatatgattcaattgttataggttgatgggagt |
257 |
Q |
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| T |
7475413 |
agacagaaaacaccattgaaactaccatatgattcaattgttataggttgatgggagt |
7475470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 7488083 - 7488224
Alignment:
| Q |
1 |
tcacaactttgaaatcaatgatgttcggatcatctgcaccaaaaccatacatagatgatttggtatcgaggcagctagtagggggaatacgatggacctc |
100 |
Q |
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| T |
7488083 |
tcacaactttgaagttgatgttgttgggatcatcggcaccgaaaccatacatgcatgagtcgttatcaaggcagagactcggaggaacacggtggacctc |
7488182 |
T |
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| Q |
101 |
tctagttgttgggttccaaataattaactcatctagacaact |
142 |
Q |
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| T |
7488183 |
tctagttgtagggttccacataattaactcatcaagacaact |
7488224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 183 - 244
Target Start/End: Original strand, 7488233 - 7488294
Alignment:
| Q |
183 |
accaacacaaacctttgagacagaaaacaccattgaaactaccatatgattcaattgttata |
244 |
Q |
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| T |
7488233 |
accaacacaaaccttggagacagaaaacgccattgcaactaccatatgattccattcttata |
7488294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6943948 - 6943898
Alignment:
| Q |
1 |
tcacaactttgaaatcaatgatgttcggatcatctgcaccaaaaccataca |
51 |
Q |
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| T |
6943948 |
tcacaactttgaaatcgatgatgttggaatcatcagcaccgaaaccataca |
6943898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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