View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12567_high_1 (Length: 353)
Name: NF12567_high_1
Description: NF12567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12567_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 4902928 - 4902745
Alignment:
| Q |
1 |
gcatcgccatttctttccatctgttctcctacaccttcctggttccggatcggtgttgttcgagtatcccagatggaatcctccccatcccactgcatca |
100 |
Q |
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| T |
4902928 |
gcatcgccatttctttccatctgttctcctacaccttcctggttccggatcggtgttgttcgagtatcccagatggaatcctccccatcccactgcatca |
4902829 |
T |
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| Q |
101 |
atcaaaaacatgtttaattctttcaaccaatgatgagttgatgacatcaagtagttgaaaactaacaatcaaggtcaatcattt |
184 |
Q |
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| T |
4902828 |
atcaaaaacatgtttaattctttcaaccaatgatgagttgatgacatcaagtagttgaaaactaacaatcaaggtcaatcattt |
4902745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 217 - 349
Target Start/End: Complemental strand, 4902712 - 4902580
Alignment:
| Q |
217 |
ctaatcacttttccatattactactccacctcacatgacatgttttcaatcaatgatcaatttgttttttcaaagacaaacaaaacacatatcacttttc |
316 |
Q |
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| T |
4902712 |
ctaatcacttttccatattactactccacctcacatgacatgttttcaatcaatgatcaatttgttttttcaaagacaaacaaaacacatatcacttttc |
4902613 |
T |
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| Q |
317 |
cacattttgacttttgagtgattcatctctctc |
349 |
Q |
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| T |
4902612 |
cccattttgacttttcagtgattcatctgtctc |
4902580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 52051993 - 52051953
Alignment:
| Q |
2 |
catcgccatttctttccatctgttctcctacaccttcctgg |
42 |
Q |
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| T |
52051993 |
catctccatttctttccatctgttcttctacacctacctgg |
52051953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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