View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12567_low_1 (Length: 518)
Name: NF12567_low_1
Description: NF12567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12567_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 500
Target Start/End: Original strand, 38117674 - 38118157
Alignment:
| Q |
17 |
actgattaagtgaaaatttatgaggtttataatatgtcgtcttaaactttacctggaacccattagtgcactgttaaatataagttctttgttagtgaac |
116 |
Q |
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| T |
38117674 |
actgattaagtgaaaatttatgaggtttataatatgtcgtcttaacctttacctggaacccattagtgcactgttaaatataagttctttgttagtgaac |
38117773 |
T |
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| Q |
117 |
attgaattaattcagtagatttcatgtgtggtaatatcatgttccaaacttctgagtgggctgtaaataaaatatacagcaatgttggtagatttaagtg |
216 |
Q |
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| T |
38117774 |
attgaattaattcagtagatttcatgtgtggtaatatcatgttccaaacttctgagtgggctgtaaataaaatatacagcaatgttggtagatttaagtg |
38117873 |
T |
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| Q |
217 |
atgataaagttttttcnnnnnnnttaaagtgatgatagagcaagaattatataactaaaggagatgaatatacacgatcgacagacccagttgaattttt |
316 |
Q |
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| T |
38117874 |
atgataaagttttttcaaaaaaattaaagtgatgataaagcaagaattatataactaaaggagatgaatatacacgatcgacagactcagttgaattttt |
38117973 |
T |
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| Q |
317 |
gagcggttgtaccatttcatttcaatttactactgtattgtaatttataatttctaccaaggttcacttaattcactaagtcagcatctttaaaagtggg |
416 |
Q |
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| T |
38117974 |
gagcggttgtaccatttcatttcaatttactactgtattgtaatttataatttctaccaaggttcacttaattcactaagtcagcatctttaaaagtggg |
38118073 |
T |
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| Q |
417 |
aaaaagttatttggaaattctatatattcaatgggagagactattctgaactagtgcttataagcaatgtagggggcaggggat |
500 |
Q |
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| T |
38118074 |
aaaaagttatttggaaattctatatattcaatgggagagactattctgaactagtgcttataagcaatgtagggggcaggggat |
38118157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 347 - 440
Target Start/End: Original strand, 38161606 - 38161699
Alignment:
| Q |
347 |
tactgtattgtaatttataatttctaccaaggttcacttaattcactaagtcagcatctttaaaagtgggaaaaagttatttggaaattctata |
440 |
Q |
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| T |
38161606 |
tactgtattgtaatttataatttctaccaaggttcacttaattcactaattcagtatctttataagagggaaaaagttaattggtaattctata |
38161699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 38161457 - 38161539
Alignment:
| Q |
17 |
actgattaagtgaaaatttatgaggtttataatatgtcgtcttaaactttacctggaacccattagtgcactgttaaatataa |
99 |
Q |
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| T |
38161457 |
actgattaaatgaatgtttatgaggtttataatatgtcttcttaacctttacctggaacccatttgtgcactgttaaaaataa |
38161539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 444 - 492
Target Start/End: Original strand, 38165735 - 38165783
Alignment:
| Q |
444 |
tcaatgggagagactattctgaactagtgcttataagcaatgtaggggg |
492 |
Q |
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| T |
38165735 |
tcaatggaagagactattttgaactagtgcttataagcaatgtaggggg |
38165783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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