View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12567_low_3 (Length: 352)
Name: NF12567_low_3
Description: NF12567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12567_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 269
Target Start/End: Original strand, 17784076 - 17784325
Alignment:
| Q |
18 |
acaagtcttgttaaacaatctttcagtcgaattacctgcannnnnnnctctcattaaatttataaaaataattcattcaaaagactataaaacattgacg |
117 |
Q |
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| T |
17784076 |
acaagtcttgttaaacaatctttcagtctaagtacctgcatttttt--tgtcattaaatttataaaaataattcattcaaaagactataaaacattgacg |
17784173 |
T |
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| Q |
118 |
ggaatataaaattgttgcagaaatataataaatatattaaaacgtcattttcttatcatctgatctcaaattcttttaattaaccttgcatcatcggtag |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17784174 |
ggaatataaaatcgttgcagaaatataataaatatattaaaacgtcattttcatatcatctgatctcaaattcttttaattaaccttgcatcatcggtag |
17784273 |
T |
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| Q |
218 |
ctttgccttcaaacacgtgtatatttataaaatgttgtattgtatttgtggg |
269 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
17784274 |
ctttgccttcaaagacgtgtatatttataaaatgttgtattgtatttgtggg |
17784325 |
T |
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