View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12567_low_4 (Length: 327)

Name: NF12567_low_4
Description: NF12567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12567_low_4
NF12567_low_4
[»] chr8 (15 HSPs)
chr8 (15-316)||(35164328-35164629)
chr8 (98-316)||(36821574-36821797)
chr8 (105-316)||(35802291-35802508)
chr8 (95-316)||(33165716-33165943)
chr8 (93-316)||(45276350-45276579)
chr8 (88-316)||(8416579-8416813)
chr8 (130-316)||(924060-924252)
chr8 (198-316)||(2025546-2025664)
chr8 (93-316)||(22936517-22936746)
chr8 (198-315)||(3590107-3590224)
chr8 (170-263)||(30210472-30210570)
chr8 (170-263)||(30984331-30984429)
chr8 (219-316)||(13015733-13015830)
chr8 (194-263)||(34774377-34774446)
chr8 (170-234)||(629483-629552)
[»] chr3 (31 HSPs)
chr3 (98-316)||(42074320-42074543)
chr3 (98-316)||(33025745-33025968)
chr3 (97-316)||(48180996-48181220)
chr3 (97-316)||(28182296-28182521)
chr3 (98-316)||(53687324-53687547)
chr3 (98-308)||(51229655-51229870)
chr3 (84-316)||(45150511-45150749)
chr3 (97-313)||(42274445-42274665)
chr3 (97-316)||(51407391-51407615)
chr3 (189-316)||(11263715-11263842)
chr3 (89-316)||(48254451-48254684)
chr3 (198-316)||(44610772-44610889)
chr3 (194-316)||(39251505-39251627)
chr3 (170-263)||(51129044-51129142)
chr3 (94-186)||(11257748-11257841)
chr3 (93-268)||(31813323-31813504)
chr3 (188-263)||(47697100-47697175)
chr3 (202-316)||(45489058-45489172)
chr3 (170-263)||(47141431-47141529)
chr3 (198-316)||(50392767-50392885)
chr3 (188-263)||(1527632-1527707)
chr3 (202-308)||(28883727-28883833)
chr3 (194-263)||(52692034-52692103)
chr3 (273-316)||(30810816-30810859)
chr3 (189-308)||(40237323-40237442)
chr3 (194-263)||(38469175-38469244)
chr3 (198-270)||(41535847-41535919)
chr3 (198-271)||(30809842-30809915)
chr3 (198-309)||(44328692-44328796)
chr3 (121-165)||(40237272-40237317)
chr3 (199-271)||(21985400-21985472)
[»] chr7 (22 HSPs)
chr7 (93-316)||(30825113-30825341)
chr7 (98-316)||(14999797-15000019)
chr7 (98-316)||(25970360-25970584)
chr7 (98-312)||(43664765-43664984)
chr7 (95-308)||(26826306-26826525)
chr7 (95-316)||(25472712-25472939)
chr7 (121-308)||(39857027-39857220)
chr7 (92-316)||(37371000-37371230)
chr7 (109-268)||(12909167-12909332)
chr7 (235-316)||(26827710-26827791)
chr7 (202-310)||(298614-298721)
chr7 (201-309)||(2000123-2000230)
chr7 (170-263)||(25341474-25341572)
chr7 (170-263)||(31012432-31012530)
chr7 (97-316)||(30139776-30140001)
chr7 (198-316)||(32450784-32450902)
chr7 (189-263)||(41064633-41064707)
chr7 (202-316)||(47085636-47085750)
chr7 (251-316)||(47158170-47158235)
chr7 (250-310)||(45202556-45202616)
chr7 (198-272)||(19544572-19544646)
chr7 (250-315)||(47238917-47238982)
[»] chr2 (22 HSPs)
chr2 (100-316)||(3738995-3739215)
chr2 (97-314)||(37996645-37996867)
chr2 (93-316)||(37640708-37640937)
chr2 (93-316)||(7473440-7473669)
chr2 (97-316)||(17480740-17480965)
chr2 (93-316)||(43342224-43342452)
chr2 (94-316)||(35458132-35458360)
chr2 (236-312)||(32497160-32497236)
chr2 (202-316)||(44002684-44002798)
chr2 (93-268)||(13892674-13892855)
chr2 (93-268)||(14032799-14032980)
chr2 (131-268)||(14033332-14033475)
chr2 (170-263)||(14379738-14379836)
chr2 (170-263)||(31686817-31686915)
chr2 (170-263)||(31786777-31786875)
chr2 (170-263)||(40254422-40254520)
chr2 (170-263)||(44282572-44282670)
chr2 (170-263)||(2443695-2443793)
chr2 (199-291)||(37551592-37551684)
chr2 (251-316)||(19860339-19860404)
chr2 (217-316)||(43695016-43695114)
chr2 (199-271)||(33598107-33598179)
[»] chr4 (29 HSPs)
chr4 (98-316)||(53663582-53663805)
chr4 (97-309)||(53404065-53404283)
chr4 (98-316)||(45105735-45105957)
chr4 (93-309)||(38767713-38767935)
chr4 (93-316)||(22606307-22606536)
chr4 (95-309)||(49723708-49723927)
chr4 (152-310)||(30418350-30418514)
chr4 (119-308)||(28911529-28911724)
chr4 (198-308)||(16203049-16203159)
chr4 (198-316)||(39732843-39732961)
chr4 (198-316)||(50523818-50523936)
chr4 (198-316)||(5937790-5937908)
chr4 (88-268)||(52058247-52058433)
chr4 (93-316)||(28963816-28964044)
chr4 (152-316)||(26457093-26457262)
chr4 (170-263)||(24038091-24038189)
chr4 (170-263)||(24246618-24246716)
chr4 (170-263)||(31431065-31431163)
chr4 (251-316)||(48407038-48407103)
chr4 (216-316)||(51677153-51677253)
chr4 (170-263)||(39382987-39383085)
chr4 (188-263)||(18140475-18140550)
chr4 (188-263)||(49127688-49127763)
chr4 (241-308)||(29385991-29386058)
chr4 (170-263)||(51834248-51834346)
chr4 (131-225)||(48406936-48407036)
chr4 (216-301)||(8503819-8503904)
chr4 (189-241)||(29810222-29810274)
chr4 (91-186)||(29386114-29386209)
[»] chr5 (28 HSPs)
chr5 (99-316)||(8958450-8958672)
chr5 (95-316)||(11018376-11018602)
chr5 (93-316)||(41040083-41040312)
chr5 (97-316)||(53614-53838)
chr5 (120-316)||(2526233-2526434)
chr5 (93-316)||(31905352-31905581)
chr5 (198-316)||(10900165-10900283)
chr5 (191-316)||(41742169-41742294)
chr5 (198-316)||(40979452-40979570)
chr5 (99-209)||(32872636-32872751)
chr5 (93-268)||(21022627-21022808)
chr5 (93-268)||(27739346-27739527)
chr5 (93-268)||(39236891-39237072)
chr5 (100-316)||(19356429-19356652)
chr5 (198-308)||(19375361-19375471)
chr5 (198-308)||(33387651-33387761)
chr5 (131-268)||(33229164-33229307)
chr5 (170-263)||(29542471-29542569)
chr5 (188-263)||(3260868-3260943)
chr5 (99-268)||(7073270-7073445)
chr5 (188-263)||(14082914-14082989)
chr5 (188-263)||(42663457-42663532)
chr5 (194-263)||(33115063-33115132)
chr5 (131-268)||(21022042-21022185)
chr5 (250-310)||(33082859-33082919)
chr5 (250-306)||(25256772-25256827)
chr5 (250-306)||(25320563-25320618)
chr5 (199-271)||(29367450-29367522)
[»] scaffold0006 (1 HSPs)
scaffold0006 (97-310)||(91461-91681)
[»] scaffold0069 (1 HSPs)
scaffold0069 (97-297)||(16742-16947)
[»] chr1 (36 HSPs)
chr1 (93-316)||(47655835-47656064)
chr1 (93-316)||(13509887-13510116)
chr1 (98-316)||(4485128-4485353)
chr1 (122-316)||(11829028-11829228)
chr1 (97-316)||(6706060-6706283)
chr1 (98-316)||(11051109-11051333)
chr1 (130-316)||(44740105-44740296)
chr1 (93-268)||(35604736-35604917)
chr1 (217-316)||(3850812-3850911)
chr1 (191-308)||(7385251-7385368)
chr1 (93-268)||(46406343-46406524)
chr1 (95-316)||(46033624-46033854)
chr1 (219-316)||(24075576-24075673)
chr1 (198-316)||(1762251-1762369)
chr1 (170-263)||(15353306-15353404)
chr1 (170-263)||(26821460-26821558)
chr1 (170-263)||(36496081-36496179)
chr1 (170-263)||(38627616-38627714)
chr1 (170-263)||(38843229-38843327)
chr1 (170-263)||(50979265-50979363)
chr1 (252-316)||(50030915-50030979)
chr1 (170-260)||(7593236-7593331)
chr1 (217-316)||(41512196-41512295)
chr1 (188-263)||(51488525-51488600)
chr1 (170-263)||(5271533-5271631)
chr1 (217-311)||(42137653-42137747)
chr1 (194-263)||(27000296-27000365)
chr1 (217-300)||(31100429-31100512)
chr1 (217-284)||(27065077-27065144)
chr1 (189-263)||(27575997-27576071)
chr1 (252-316)||(11051044-11051108)
chr1 (253-316)||(49430721-49430784)
chr1 (251-316)||(27416651-27416715)
chr1 (120-188)||(49430411-49430480)
chr1 (276-316)||(27067246-27067286)
chr1 (251-315)||(45179418-45179482)
[»] chr6 (8 HSPs)
chr6 (120-316)||(4146761-4146962)
chr6 (198-315)||(30134180-30134297)
chr6 (92-268)||(21517352-21517534)
chr6 (131-308)||(10683129-10683310)
chr6 (198-316)||(20838442-20838560)
chr6 (93-290)||(365513-365716)
chr6 (170-263)||(30018851-30018949)
chr6 (189-264)||(31746188-31746263)
[»] scaffold0068 (1 HSPs)
scaffold0068 (93-316)||(37619-37846)
[»] scaffold0808 (1 HSPs)
scaffold0808 (105-316)||(4025-4241)
[»] scaffold0097 (1 HSPs)
scaffold0097 (131-316)||(33009-33200)
[»] scaffold0184 (1 HSPs)
scaffold0184 (217-316)||(9641-9740)
[»] scaffold0702 (1 HSPs)
scaffold0702 (198-303)||(4524-4629)
[»] scaffold0662 (1 HSPs)
scaffold0662 (198-303)||(3469-3574)


Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 316
Target Start/End: Complemental strand, 35164629 - 35164328
Alignment:
Q  15 acgtgtgtcatagtttttgcaggtaaaccactccatatggagtagcgatgttgtcctcctctatcattaagcgacttcgagcctgtttgttttggctttt 114  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  35164629 acgtgtgtcgtagtttttgcaggtaaaccactccatatggagtagcgatgttgtcctcctctatcatcaagcgactttgagcctgtttgttttggctttt 35164530  T
Q  115 cagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagcttctatcctccaaaagcaattctc 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35164529 cagcagcaagaagcacttctacaaacctcaaaagtggaaattgaattttcaatgttgtttggtttggcttttcagcttctatcctccaaaagcaattctc 35164430  T
Q  215 cttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccct 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  35164429 cttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacttattattttcttttattgccct 35164330  T
Q  315 tt 316  Q
    ||    
T  35164329 tt 35164328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 36821797 - 36821574
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||     ||||    
T  36821797 tgtttgttttggcttttcagcaacaagaaacacttctacaaacctcaaaagtgaaaattgagttttcaatgttgtttggtttggcttttcagaattgctt 36821698  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    ||||||||||||||||||| ||||| ||| ||||||||| || ||| | |||| |  ||||||||| |||||||||||| ||||||| ||||||||||||    
T  36821697 ctatcctccaaaagcaattatccttaaagttacaattccaagctttaggcttttcaagaatcaattttacattaaattttatattttgattattacaacc 36821598  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||||| ||||||    
T  36821597 tattattttcctttattacccttt 36821574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 105 - 316
Target Start/End: Complemental strand, 35802508 - 35802291
Alignment:
Q  105 tttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttca-----gcttctatcc 198  Q
    ||||||||||||| | |||||||   ||||| || ||||||||||| ||| |||||||||||||| ||||||||||| ||||| |     ||||||||||    
T  35802508 tttggcttttcagtaccaagaagtgattctagaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttgacttttaaaaattgcttctatcc 35802409  T
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattat 298  Q
    ||||||||||||| ||||||||||||||  |||||| ||||| ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  35802408 tccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctacattaaattttatattttgattattacaacctattat 35802309  T
Q  299 tttcctttattgcccttt 316  Q
    ||||||||||||||||||    
T  35802308 tttcctttattgcccttt 35802291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 95 - 316
Target Start/End: Original strand, 33165716 - 33165943
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc--- 190  Q
    |||||||||||| | ||||||| || |||||| ||||||||||||||||||||||| ||| ||||||||| ||   ||||||||||||||||| ||        
T  33165716 gcctgtttgttt-gacttttcaccatcaagaatcacttctacaaacctcaaaagtgaaaaattgagtttttaacagtgtttggtttggcttttaagaatt 33165814  T
Q  191 --ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaata-ttttaattatta 287  Q
      |||||||||| ||||| |||||||||| |||||| |||||||| ||||||  ||| || ||||||||||| |||||||||| ||| |||| |||||||    
T  33165815 gtttctatcctctaaaagtaattctccttaaagctataattcctaatttttggtttttctagaatcaattctccattaaattttatatttttgattatta 33165914  T
Q  288 caacctattattttcctttattgcccttt 316  Q
    ||||| ||||||||||||||||| |||||    
T  33165915 caacccattattttcctttattgtccttt 33165943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 45276579 - 45276350
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttca--- 188  Q
    ||||||||||| |||||||||||||||||||||||   ||| |||| | ||||||||| |||  ||| |||| |||| ||||| ||||| ||||| |       
T  45276579 gagcctgtttggtttggcttttcagcagcaagaagtgattcaacaaccttcaaaagtgaaaaactgaatttttaatggtgttttgtttgacttttaaaaa 45276480  T
Q  189 --gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
      | || |||||||||||||||||| ||||| ||||||||| |||||| || |  |||| || ||||||||||||||||||||||  |||||| ||||||    
T  45276479 ttgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctacattaaattttctattttgattatt 45276380  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||||||| |||||||||    
T  45276379 acaacctattattttcctttgttgcccttt 45276350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 88 - 316
Target Start/End: Original strand, 8416579 - 8416813
Alignment:
Q  88 acttcgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggctttt 186  Q
    |||| ||||||||||| |||||||||||| || |||||||   ||||||||   ||||||||| ||| |||| |||| |||  |||||| ||||||||||    
T  8416579 acttagagcctgtttggtttggcttttcaacaccaagaagtgattctacaactttcaaaagtgaaaaattgaatttttaatcgtgtttgatttggctttt 8416678  T
Q  187 cagc-----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaa 281  Q
     ||      ||||||||||||||||||||| ||||| ||||||||| |||||  || |  |||| || ||||||||||||||||||||||  |||||| |    
T  8416679 aagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctacattaaattttctattttga 8416778  T
Q  282 ttattacaacctattattttcctttattgcccttt 316  Q
    |||||||||| ||||||||||||||||||||||||    
T  8416779 ttattacaacttattattttcctttattgcccttt 8416813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 316
Target Start/End: Original strand, 924060 - 924252
Alignment:
Q  130 cttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagct 223  Q
    ||||||||| |||||||||||| || |||||||||||||  ||||||||||| |||||||     |||||||| ||||||||| ||||||  || |||||    
T  924060 cttctacaacacctcaaaagtgaaatttgagttttcaatcatgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagct 924159  T
Q  224 acaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||||||  |||||  ||  || ||||||||||  || || |||| ||||||| ||||||||||||||||||||| ||||||||||||||    
T  924160 acaattcctaacttttggtttaactagaatcaattcgtcaatatattttatattttgattattacaacctattatttttctttattgcccttt 924252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 2025546 - 2025664
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||||||||| |   ||||||||||||||||||||||||| ||  || ||||||||||| || || |||| ||||||| |||||||||||||||||    
T  2025546 ctccaaaagcaattttggatgaagctacaattcctagtttttgagttagctagaatcaattctccaatatattttatattttgattattacaacctatta 2025645  T
Q  298 ttttcctttattgcccttt 316  Q
    |||||||||||||||||||    
T  2025646 ttttcctttattgcccttt 2025664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 22936746 - 22936517
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||| ||||||| || |||||||   |||||||| | ||||||||| |||  |||||||| |||| ||||| ||||  ||||| ||      
T  22936746 gagcctgtttggtttgacttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttcacttttaagaa 22936647  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        |||||||||||||||  |||| | ||| ||||||||| |||||| || |  |||| || ||||||||||||||||||||||  |||||  ||||||    
T  22936646 ttgattctatcctccaaaataaattattcttaaagctacaaatcctagcttatagcttttctagaatcaattctacattaaattttctatttcgattatt 22936547  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||||||||||| |||||    
T  22936546 acaacctattattttcctttattggccttt 22936517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 3590107 - 3590224
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||| |||||||  ||||||||||||||||||  |||||| ||  || ||||||||||| |||||||||| |||||||||||||||||||  ||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattctccattaaattttatattttaattattacaacaaatta 3590206  T
Q  298 ttttcctttattgccctt 315  Q
    ||||| ||||||| ||||    
T  3590207 ttttcttttattgtcctt 3590224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 30210472 - 30210570
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  30210472 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 30210570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 30984429 - 30984331
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  30984429 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 30984331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 13015733 - 13015830
Alignment:
Q  219 aagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||  |||||| ||  |  |||||||||||||||||||||| ||||||| |||||||||||   |||||||||||||||| |||||    
T  13015733 aagctacaattcctaacttttgagttaacgagaatcaattctacattaaattttatattttgattattacaactcgttattttcctttattgtccttt 13015830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 34774446 - 34774377
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  34774446 tatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 34774377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 234
Target Start/End: Complemental strand, 629552 - 629483
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctag 234  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  |||||||||||||||||||    
T  629552 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 629483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 2e-92; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 42074320 - 42074543
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----ctt 192  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||    
T  42074320 tgtttgttttggcttttgagcaacaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgctgtttggtttggcttttcagaattgctt 42074419  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    ||||||||||||| ||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  42074420 ctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctacattaaatttaatattttgattattacaacc 42074519  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||    
T  42074520 tattattttcctttattgcccttt 42074543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 33025968 - 33025745
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||     ||||    
T  33025968 tgtttgttttggcttttcagcaacaaaatgcacttctacaaacctcaaaagtggaaattgagttatcaatgttgtttggtttgacttttcaaaattgctt 33025869  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    ||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||  |||||||||||||| ||||||||||||||||||||||||| |    
T  33025868 ctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctacataaaatttaatattttaattattacaaac 33025769  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||| | ||||||    
T  33025768 tattattttcctttactacccttt 33025745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 48180996 - 48181220
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----ct 191  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| | ||| ||     ||    
T  48180996 ctgtttgttttggcttttcagcaacaagaagcacttctacaaacctcagaagtggaaattgagttttcaatgttttttggtttgacattttagaattgct 48181095  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||||||||||||||| || ||||||||||||| ||||| ||||||| |||||||||||||||||||||| ||||||| |||||| ||||    
T  48181096 tctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctacattaaattttatattttgattattgcaac 48181195  T
Q  292 ctattattttcctttattgcccttt 316  Q
    |||||||||| ||||||||||||||    
T  48181196 ctattatttttctttattgcccttt 48181220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 28182296 - 28182521
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaa-gtggaaattgagttttcaatgttgtttggtttggcttttcag-----c 190  Q
    |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||     |    
T  28182296 ctgtttgttttggcttttcaacaacaagaagcacttctacaaacctcaaaaagtggaaattgagttttcaatgttgtttggtttggctttttagaattgc 28182395  T
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||||||| ||||||| ||||| |||||| ||||||||  ||||| |||||||  ||||||||||||||||||||| ||||||| ||||||||||    
T  28182396 ttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattacaa 28182495  T
Q  291 cctattattttcctttattgcccttt 316  Q
    |||||||||||| |||||||||||||    
T  28182496 cctattattttcttttattgcccttt 28182521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 53687547 - 53687324
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    |||||| |||||||||||||||  || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||     ||||    
T  53687547 tgtttggtttggcttttcagcaataaaaagcacttctacaaacctcaaaagtggaaattgagttttcaatattgtttggtttgacttttcataattgctt 53687448  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    |||||||||||||||||||||  || |||||||||||||||| ||||| |||| ||  ||||||||||||| ||||||||||||||| ||||||||||||    
T  53687447 ctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacactaaatttaatattttgattattacaacc 53687348  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||| ||||||||||||||    
T  53687347 tattatttttctttattgcccttt 53687324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 98 - 308
Target Start/End: Original strand, 51229655 - 51229870
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    ||||||||||| ||||||| ||  ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||| ||||||||     ||||    
T  51229655 tgtttgttttgacttttcaacaataagaagcacttctacaaactttaaaattggaaattgagttttcaatgttgtttggtttagcttttcaaaattgctt 51229754  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    |||||||||||||  |||||||||| |||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  51229755 ctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctacattaaatttaatattttgattattacaacc 51229854  T
Q  293 tattattttcctttat 308  Q
    |||||||||| |||||    
T  51229855 tattattttcttttat 51229870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 84 - 316
Target Start/End: Original strand, 45150511 - 45150749
Alignment:
Q  84 agcgacttcgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggc 182  Q
    |||||||| ||||||||||||||||||||||||||| |||||||   ||||| || |||||||| || ||| |||||||||||||| |||||||||||||    
T  45150511 agcgacttagagcctgtttgttttggcttttcagcaccaagaagtgattctataaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggc 45150610  T
Q  183 ttttcagc-----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatatt 277  Q
    |||| ||      ||||||||||||||| ||||| ||||||||||||||| |||||| |||||  |||||| |||||||||||||||||||||| |||||    
T  45150611 ttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctacattaaattttatatt 45150710  T
Q  278 ttaattattacaacctattattttcctttattgcccttt 316  Q
    || ||| ||||||||||||||||||||||||||||||||    
T  45150711 ttgattgttacaacctattattttcctttattgcccttt 45150749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 97 - 313
Target Start/End: Original strand, 42274445 - 42274665
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||| |     | |    
T  42274445 ctgtttgttttggcttttcagcaacaagaaacacttctacacacctcaaaagtggaaattgagttttgaatgttgtttgatttggctttttagaattgat 42274544  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||||||||||||||| ||| |||||||||||| ||||| ||||| | ||||||||||||||||||||||  || |||  |||| ||||     
T  42274545 tctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctacattaaattt-ttaatttggttataacaat 42274643  T
Q  292 ctattattttcctttattgccc 313  Q
    ||||||||||||||||||||||    
T  42274644 ctattattttcctttattgccc 42274665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 51407391 - 51407615
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    ||||||||||||||||||||||| ||||||||  ||||||| | || ||||||| |||||||||||| || |||||||||||||||||||||     |||    
T  51407391 ctgtttgttttggcttttcagcatcaagaagccattctacatatctgaaaagtgaaaattgagtttttaaagttgtttggtttggcttttcagaattgct 51407490  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||||||||| |  |||||||||||||| |||||||||   ||  ||  |||||||||| || ||||| | |||||||||||||||||||    
T  51407491 tctatcctccaaaagcaattttggttgaagctacaatttctagttttttggttaactaaaatcaattctccaataaatattatattttaattattacaac 51407590  T
Q  292 ctattattttcctttattgcccttt 316  Q
     ||||||||||||||||||||||||    
T  51407591 ttattattttcctttattgcccttt 51407615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 189 - 316
Target Start/End: Original strand, 11263715 - 11263842
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 288  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||||| |||||||||||| ||||||||| ||||||| ||||||||    
T  11263715 gcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattctagattaaattttatattttgattattac 11263814  T
Q  289 aacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||    
T  11263815 aacctattattttcctttattgcccttt 11263842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 89 - 316
Target Start/End: Complemental strand, 48254684 - 48254451
Alignment:
Q  89 cttcgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttc 187  Q
    ||||||||||||||| |||| ||||||| || ||| |||   |||||||| | ||||||||| |||  |||| ||| |||| ||||||||||| |||||     
T  48254684 cttcgagcctgtttggtttgacttttcaacaccaataagtgattctacaaccttcaaaagtgaaaaactgagcttttaatggtgtttggtttgactttta 48254585  T
Q  188 agc-----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaat 282  Q
    ||      || |||||||||||||||||| ||||| ||||||||| |||||| || |  |||| || |||||||||||| |||||||||  |||||| ||    
T  48254584 agaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctatattaaattttctattttgat 48254485  T
Q  283 tattacaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||| ||||||||||||||    
T  48254484 tattacaacctattatttttctttattgcccttt 48254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 44610889 - 44610772
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||  |||||||||||||| |||| |||||| |||  | ||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattctccattaaattttatattttaattattacaacc-atta 44610791  T
Q  298 ttttcctttattgcccttt 316  Q
    |||| |||||||| |||||    
T  44610790 tttttctttattgtccttt 44610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 194 - 316
Target Start/End: Original strand, 39251505 - 39251627
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacct 293  Q
    |||||||||||| ||||| ||| | ||||||||| |||||  || | |||||  | ||||||||||||||||||||||  |||||| ||||||||||| |    
T  39251505 tatcctccaaaaacaattatccctaaagctacaaatcctaacttctaacttttttagaatcaattctacattaaattttctattttgattattacaacat 39251604  T
Q  294 attattttcctttattgcccttt 316  Q
    |||||||| ||||||||||||||    
T  39251605 attatttttctttattgcccttt 39251627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 51129142 - 51129044
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  51129142 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 51129044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 94 - 186
Target Start/End: Original strand, 11257748 - 11257841
Alignment:
Q  94 agcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggctttt 186  Q
    |||||||||||||||||||||||||| |||||||   ||||||||   ||||||||| ||| |||||||||||||| |||||||||||||||||    
T  11257748 agcctgtttgttttggcttttcagcatcaagaagtgattctacaattatcaaaagtgaaaaattgagttttcaatggtgtttggtttggctttt 11257841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 31813323 - 31813504
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  | |||||| || |||||||   ||||| || ||||||||||| |||  ||| ||||||||| ||||| ||||||||||| ||      
T  31813323 gagcctgtttggttcagtttttcaccaccaagaagtgattctataaccctcaaaagtgaaaagctgaattttcaatggtgtttagtttggcttttaagaa 31813422  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||||||||||||| ||| ||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  31813423 ttgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 31813504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 47697100 - 47697175
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  47697100 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 47697175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 45489172 - 45489058
Alignment:
Q  202 aaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    ||||||||||||   |||||||||||||||||  ||| || ||  || ||||||||| | || |||| || ||||||| |||||||||||||||||||||    
T  45489172 aaaagcaattctaggtgaagctacaattcctaactttggagttaactagaatcaattttccaataaaatttatattttgattattacaacctattatttt 45489073  T
Q  302 cctttattgcccttt 316  Q
    ||||||||| |||||    
T  45489072 cctttattgtccttt 45489058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 47141529 - 47141431
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||| | ||||||||||||||    
T  47141529 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctaca 47141431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 50392885 - 50392767
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||| ||||||   |||| ||||||||||||| |||| | ||  || |||| ||||||  | ||||||| ||||||| |||||||||||||||||    
T  50392885 ctccaaaagtaattctggatgaaactacaattcctagcttttaagttagctagaataaattctctaataaattttatatttttattattacaacctatta 50392786  T
Q  298 ttttcctttattgcccttt 316  Q
    |||||||||||||| ||||    
T  50392785 ttttcctttattgctcttt 50392767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 1527632 - 1527707
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  1527632 agcttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 1527707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 308
Target Start/End: Original strand, 28883727 - 28883833
Alignment:
Q  202 aaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    ||||||||||||   |||||||||||||| ||| |||||| ||   | ||||||||||| |||||||||| ||||||| |||||||  ||| ||||||||    
T  28883727 aaaagcaattctgactgaagctacaattcttagcttttgagttaaatagaatcaattctccattaaattttatattttgattattattacccattatttt 28883826  T
Q  302 cctttat 308  Q
    |||||||    
T  28883827 cctttat 28883833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 52692034 - 52692103
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||  ||||||||||||||||||  || | |||||||| ||||||||||||||    
T  52692034 tatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctaca 52692103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 316
Target Start/End: Original strand, 30810816 - 30810859
Alignment:
Q  273 atattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  30810816 atattttgattattacaacctattattttcctttattgcccttt 30810859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 308
Target Start/End: Original strand, 40237323 - 40237442
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 288  Q
    ||||||| | ||||||||||||| |   ||||| |||||||||||  |||| | ||  || ||||||||||| ||| |||||| ||||||| ||||||||    
T  40237323 gcttctaccttccaaaagcaattttggatgaagttacaattcctaacttttaaattaactagaatcaattctccatcaaattttatattttgattattac 40237422  T
Q  289 aacctattattttcctttat 308  Q
    || | |||||||||||||||    
T  40237423 aatccattattttcctttat 40237442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 38469175 - 38469244
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||  ||||||||||||||| ||| || | ||||||||  |||||||||||||    
T  38469175 tatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctaca 38469244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 41535847 - 41535919
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatt 270  Q
    ||||||||||||||||| |||||||||  | ||||||||||||| |||  | |||||||||||||||| ||||    
T  41535847 ctccaaaagcaattctctttgaagctaggaatcctagtttttgaatttggtagaatcaattctacatttaatt 41535919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 30809842 - 30809915
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaattt 271  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||  || ||||||||||| || |||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattt 30809915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 309
Target Start/End: Original strand, 44328692 - 44328796
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||||||||| |   |||||||||||||||||| |||||| ||  || ||||||||||| ||||       |||||||||| ||||||||  ||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattctccatt-------atattttaatcattacaactcatta 44328784  T
Q  298 ttttcctttatt 309  Q
    ||||||||||||    
T  44328785 ttttcctttatt 44328796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 40237272 - 40237317
Alignment:
Q  121 caagaagcacttctacaa-acctcaaaagtggaaattgagttttca 165  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||||    
T  40237272 caagaagcacttctacaacacctcaaaagtgaaaattgaattttca 40237317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 21985400 - 21985472
Alignment:
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaattt 271  Q
    ||||||||||||| || ||||||||| || |||||  |||||| |||  | |||||||||||||||| |||||    
T  21985400 tccaaaagcaattttctttgaagctagaaatcctaacttttgagtttggtagaatcaattctacatttaattt 21985472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 93 - 316
Target Start/End: Original strand, 30825113 - 30825341
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag--- 189  Q
    |||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||       
T  30825113 gagcctctttgttttggctttttagcagcaagaaacacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttgcctttttagaat 30825212  T
Q  190 --cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatta 287  Q
      |||||||||||||||| ||||||||||| ||| |||||||||||| ||||| ||||||  ||||||||||||||||||||||||||||||||||||||    
T  30825213 tgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctacattaaatttaatattttaattatta 30825312  T
Q  288 caacctattattttcctttattgcccttt 316  Q
    |||||||||||||| ||||||||||||||    
T  30825313 caacctattatttttctttattgcccttt 30825341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 14999797 - 15000019
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----tt 192  Q
    ||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||      ||    
T  14999797 tgtttgttttggcttttgagcaacaagaagcacttctacaa-cctcaaaagtggaaattgagttttcaatgttgtttggtttggctttttagaattgatt 14999895  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    |||||||||||||| |||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||| |    
T  14999896 ctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacattaaattttatattttgattattacaatc 14999995  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||||| ||||||    
T  14999996 tattattttcctttattacccttt 15000019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 25970360 - 25970584
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-----ct 191  Q
    |||||||||||||||||||||| || ||| ||||||||||||| ||||||||| ||| |||| | ||||||| ||||||||||||||||| ||     ||    
T  25970360 tgtttgttttggcttttcagcatcatgaatcacttctacaaacatcaaaagtgaaaaattgaatattcaatggtgtttggtttggcttttaagaattgct 25970459  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    ||||||||||||||| ||||||| || |||||||||||||||| ||||| ||||| | |||||||||||||||||||||| ||||||| |||||||||||    
T  25970460 tctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctacattaaattttatattttgattattacaac 25970559  T
Q  292 ctattattttcctttattgcccttt 316  Q
    |||||||||||||||||||| ||||    
T  25970560 ctattattttcctttattgctcttt 25970584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 98 - 312
Target Start/End: Complemental strand, 43664984 - 43664765
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----tt 192  Q
    ||||||||||||||||||| || ||||||  ||||||| |||||||||||||| ||||||| |||||||||||||||| ||| |||||||||      ||    
T  43664984 tgtttgttttggcttttcaacaacaagaattacttctataaacctcaaaagtgaaaattgaattttcaatgttgtttgttttagcttttcagaattcatt 43664885  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    ||||||||||||||||||| | ||| ||||||||||| |||   |||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||    
T  43664884 ctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctacattaaattttatattttgattattacaacc 43664785  T
Q  293 tattattttcctttattgcc 312  Q
    ||||||||||||||||||||    
T  43664784 tattattttcctttattgcc 43664765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 95 - 308
Target Start/End: Original strand, 26826306 - 26826525
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag---- 189  Q
    |||| ||||||||||||||||||||  || || ||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||| ||        
T  26826306 gcctatttgttttggcttttcagcataaaaaatcacttctacaaacctcaaaagtggaaaattgagttttcaatggtatttggtttggcttttaagaatt 26826405  T
Q  190 -cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 288  Q
     ||||||||||||||||| |||||||||| ||| |||||||||||  ||||  |||||||  |||||||||||||||||| || |||||||  |||||||    
T  26826406 acttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctacattaaaatttatattttgcttattac 26826505  T
Q  289 aacctattattttcctttat 308  Q
    ||||||||||||||||||||    
T  26826506 aacctattattttcctttat 26826525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 95 - 316
Target Start/End: Complemental strand, 25472939 - 25472712
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtgg-aaattgagttttcaatgttgtttggtttggcttttcagc--- 190  Q
    ||||||||| |||||||||||| || |||||||   |||||||| | |||||| ||  |||||||||||| |||| ||||||||||| ||||| ||        
T  25472939 gcctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaaatgacaaattgagtttttaatggtgtttggtttgacttttaagaatt 25472840  T
Q  191 --ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 288  Q
      ||||||||||||||||||||| ||||||||||||||| || ||| || |   ||| || ||||||||||||||||||||||  |||||| ||||||||    
T  25472839 gattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctacattaaattttctattttgattattac 25472740  T
Q  289 aacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||    
T  25472739 aacctattattttcctttattgcccttt 25472712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 121 - 308
Target Start/End: Original strand, 39857027 - 39857220
Alignment:
Q  121 caagaagcacttctacaaa-cctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattctc 214  Q
    ||||||||||||||| ||  |||  |||||| ||||||||||||||||  ||||||||||| ||||||||     ||||||||||||||||| ||||||     
T  39857027 caagaagcacttctataacgccttcaaagtgaaaattgagttttcaatcatgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctg 39857126  T
Q  215 cttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttat 308  Q
      |||||||||||||| ||| |||||| ||  || ||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||    
T  39857127 gatgaagctacaattcatagcttttgagttaactagaatcaattctccattaaattttatattttgattattacaacccattattttcctttat 39857220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 92 - 316
Target Start/End: Original strand, 37371000 - 37371230
Alignment:
Q  92 cgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc 190  Q
    |||||||||||| |||| ||||||| || ||||||  | ||||||||   ||||||||| ||| || |||||| |||| ||||||||||||||||| ||     
T  37371000 cgagcctgtttggtttgacttttcaacatcaagaaagaattctacaactttcaaaagtgaaaaattaagtttttaatgatgtttggtttggcttttaaga 37371099  T
Q  191 -----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattat 285  Q
         ||||||||||||||||||||| || || ||||||||| |||||  || |  |||| || ||||||||||||||||||||||  |||||| |||||    
T  37371100 attggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctacattaaattttctattttgattat 37371199  T
Q  286 tacaacctattattttcctttattgcccttt 316  Q
    |||||| ||| ||||||||||||||||||||    
T  37371200 tacaacttatgattttcctttattgcccttt 37371230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 109 - 268
Target Start/End: Original strand, 12909167 - 12909332
Alignment:
Q  109 gcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctcca 202  Q
    |||||||| || |||||||   |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||| ||||| ||      ||||||||||||    
T  12909167 gcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaagaattgattctatcctcca 12909266  T
Q  203 aaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
    ||||||||| ||| ||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  12909267 aaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 12909332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 26827791 - 26827710
Alignment:
Q  235 tttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||| |||||||||| |||||||||| |||||||| |||||    
T  26827791 tttttgcctttcctagaatcaattctacattaaattttatattttgattattacaatctattatttttctttattgtccttt 26827710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 202 - 310
Target Start/End: Complemental strand, 298721 - 298614
Alignment:
Q  202 aaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    |||||||||| |  ||||||||||||||| ||| |||| | ||| || ||||||||||| |||||||||| |||||||||||||||||||| ||||||||    
T  298721 aaaagcaattttgattgaagctacaattcttagcttttaagtttactagaatcaattctccattaaattttatattttaattattacaacc-attatttt 298623  T
Q  302 cctttattg 310  Q
    | |||||||    
T  298622 catttattg 298614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 309
Target Start/End: Complemental strand, 2000230 - 2000123
Alignment:
Q  201 caaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattt 300  Q
    ||||| |||||||  ||||||||||||||||||  |||||| ||  || ||||||||||| |||||||||| ||||||| |||||||||||| |||||||    
T  2000230 caaaaacaattctggttgaagctacaattcctaccttttgagttaactagaatcaattctccattaaattt-atattttgattattacaacccattattt 2000132  T
Q  301 tcctttatt 309  Q
    |||||||||    
T  2000131 tcctttatt 2000123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 25341572 - 25341474
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  25341572 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 25341474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 31012530 - 31012432
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  31012530 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 31012432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 316
Target Start/End: Complemental strand, 30140001 - 30139776
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaatt-gagttttcaatgttgtttggtttggcttttcagc----- 190  Q
    ||||||| ||| | |||||| || |||||||   |||||||| | | ||||||| ||||| ||||||| |||| ||||||||||| ||||| ||          
T  30140001 ctgtttggtttagtttttcaacaccaagaagtgattctacaatctttaaaagtgaaaatttgagtttttaatggtgtttggtttgacttttaagaattga 30139902  T
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    |||||| |||||||| ||||| ||||| ||||||  | || ||| || |  ||||  | ||||||||||||| ||||||||  |||||| ||||||| ||    
T  30139901 ttctattctccaaaaacaattatccttaaagctatgaatcttagcttctagcttttttagaatcaattctacgttaaattttctattttgattattataa 30139802  T
Q  291 cctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||    
T  30139801 cctattattttcctttattgcccttt 30139776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 32450784 - 32450902
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||||||||| |  |||||||||||||| |||  |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||| ||||    
T  32450784 ctccaaaagcaattttggttgaagctacaatttctaacttttgagttaactagaatcaattctccaataaattttatattttgattattacaacccatta 32450883  T
Q  298 ttttcctttattgcccttt 316  Q
    |||| ||||| || |||||    
T  32450884 tttttctttactgtccttt 32450902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 41064633 - 41064707
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||| ||||||||| | |||||||||||||||| || ||||||| || ||||||||||||||    
T  41064633 gcttctatcctccaaaaacaattctccataaagctacaattcctagcttctgacttttctagaatcaattctaca 41064707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 47085750 - 47085636
Alignment:
Q  202 aaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    |||||||||| |  |||||| |||||||||||  |||||| ||| || |||| |||||| |||| || || |||||||||||||||||||  ||||||||    
T  47085750 aaaagcaattttggttgaagttacaattcctaacttttgagtttactagaattaattctccattgaaatttatattttaattattacaactcattatttt 47085651  T
Q  302 cctttattgcccttt 316  Q
     |||||||| |||||    
T  47085650 tctttattgtccttt 47085636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 47158235 - 47158170
Alignment:
Q  251 aatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||| |||||||||| ||||||| ||||||| || |||||||||| ||||||||||||||    
T  47158235 aatcaattctccattaaattttatatttttattattataatctattatttttctttattgcccttt 47158170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 45202556 - 45202616
Alignment:
Q  250 gaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattg 310  Q
    ||||||||||| || ||||||| |||||||||||||||||| |||||||||| ||||||||    
T  45202556 gaatcaattctccaataaattttatattttaattattacaatctattatttttctttattg 45202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 19544572 - 19544646
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaattta 272  Q
    ||||||||| |||| |  ||||||||||||||| ||| |||||| ||| || ||||||||||| |||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattctccattaaattta 19544646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 315
Target Start/End: Complemental strand, 47238982 - 47238917
Alignment:
Q  250 gaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccctt 315  Q
    ||||||||||| |||||||||| |||||||  || ||||||||  ||||||| ||| |||||||||    
T  47238982 gaatcaattctgcattaaattttatattttggttgttacaaccggttatttttcttaattgccctt 47238917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 100 - 316
Target Start/End: Complemental strand, 3739215 - 3738995
Alignment:
Q  100 tttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gcttct 194  Q
    ||||||||| |||||||| |  |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||     ||||||    
T  3739215 tttgttttgccttttcaggaataagaagcacttctacaaacctcaaaactggaaattgagttttcaatgttgtt-ggtttggcttttcataattgcttct 3739117  T
Q  195 atcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaaccta 294  Q
    ||| ||||||||||||| ||||| ||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||    
T  3739116 atcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctacattaaatttaatattttgattattacaaccta 3739017  T
Q  295 ttattttcctttattgcccttt 316  Q
    ||||||| ||||||||||||||    
T  3739016 ttatttttctttattgcccttt 3738995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 314
Target Start/End: Original strand, 37996645 - 37996867
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    |||||| ||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     |||    
T  37996645 ctgtttcttttgacttttcagcaacaagaagcaattctacaaacctcaaaagtggaaattgagttttcaatattgtttggtttggcttttcataattgct 37996744  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    ||||||||||||||| ||||| |||| |||||||||||||||  ||||| ||||||| |||||||||||||||||||||| |||| || |||||||||||    
T  37996745 tctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctacattaaattttatatcttgattattacaac 37996844  T
Q  292 ctattattttcctttattgccct 314  Q
     |||||||||| |||||||||||    
T  37996845 atattattttcatttattgccct 37996867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 37640937 - 37640708
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    ||||||||||||||||||||||||||| |||||||   |||||||| |||||||| || ||| |||||||||||||| ||||||||||||||||  ||      
T  37640937 gagcctgtttgttttggcttttcagcaccaagaagtgattctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttggtttggctttcaagaa 37640838  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
       |||||||||||||||||||||| ||||||||||||||| || ||| ||||| ||||||| |||||||||||||||||||||| ||||||| |||||     
T  37640837 ttgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctacattaaattttatattttgattatc 37640738  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||| ||||||||||||||||||||||||    
T  37640737 acaacatattattttcctttattgcccttt 37640708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 316
Target Start/End: Original strand, 7473440 - 7473669
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    |||| |||||||||||||| ||||| |  ||||||   |||||||| ||||||||||| ||| |||||||||||||| |||||||||||| |||| ||      
T  7473440 gagcttgtttgttttggctattcagtattaagaagtcattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggtttttaagaa 7473539  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
       |||||||||||||||| ||||| ||||||||||||||| |||||  ||||| ||||||  |||||||||||||||||||||| ||||||| ||||||    
T  7473540 ttgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctacattaaattttatattttgattatt 7473639  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||| ||||||| |||||    
T  7473640 acaacctattattttcttttattgtccttt 7473669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 17480740 - 17480965
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc----- 190  Q
    ||||||| |||||||||||| || |||||||   |||||||| | ||||||||| |||  |||||||| |||| ||||| ||||||||||| ||          
T  17480740 ctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttagtttggcttttaagaattga 17480839  T
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||| ||||||||||| || || ||||||||| |||||| || |  |||| || ||||||||||||||||||||||  |||||| ||||||||||    
T  17480840 ttctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctacattaaattttctattttgattattacaa 17480939  T
Q  291 cctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||    
T  17480940 cctattattttcctttattgcccttt 17480965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 43342452 - 43342224
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaa-attgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||||||||||| || |||||||   |||||||| | ||||||||| || | |||||||| | || |||||| ||||| |||| ||      
T  43342452 gagcctgtttggtttggcttttcaacatcaagaagtgattctacaaccttcaaaagtgaaacaatgagttttta-tggtgtttgatttggtttttaagaa 43342354  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||||||||||||||||| ||||| ||||||||| | |||| || |  |||| || ||||||||||||||||||||||  |||||| ||||||    
T  43342353 ttgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctacattaaattttctattttgattatt 43342254  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||||    
T  43342253 acaacctattattttcctttattgcccttt 43342224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 94 - 316
Target Start/End: Complemental strand, 35458360 - 35458132
Alignment:
Q  94 agcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc-- 190  Q
    |||||||||| ||||||||||||  | ||||  |   |||||||| | ||||||||| ||| ||||||||| |||| ||||||||||| ||||| ||       
T  35458360 agcctgtttggtttggcttttcaataccaagttgtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaat 35458261  T
Q  191 ---ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatta 287  Q
       ||||||| ||||||||||||| ||||| || |||||| |||||  || |  |||| || ||||||||||||||||||||||  |||||| |||||||    
T  35458260 tgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctacattaaattttctattttgattatta 35458161  T
Q  288 caacctattattttcctttattgcccttt 316  Q
    |||||||||||||| ||||||||||||||    
T  35458160 caacctattatttttctttattgcccttt 35458132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 236 - 312
Target Start/End: Complemental strand, 32497236 - 32497160
Alignment:
Q  236 ttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcc 312  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  32497236 ttttgactttcctcgaatcaattctacattaaattttatatttgaattattataacctattattttcctttattgcc 32497160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 202 - 316
Target Start/End: Original strand, 44002684 - 44002798
Alignment:
Q  202 aaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    ||||||||||||   |||||||||||||||||| |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattattacaacctattatttt 44002783  T
Q  302 cctttattgcccttt 316  Q
     |||||| |||||||    
T  44002784 tctttatcgcccttt 44002798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 13892674 - 13892855
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| ||||||||||| |||  ||| ||||||||| |||||| |||||||||| ||      
T  13892674 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaagaa 13892773  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||||||||||||| ||| ||||||||||| |||||  ||||| ||||  | |||||||||||||||||||    
T  13892774 ttgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctacattaaa 13892855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 14032799 - 14032980
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| ||||||||||| |||  ||| ||||||||| |||||| |||||||||| ||      
T  14032799 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaatcctcaaaagtgaaaagctgaattttcaatggtgtttgatttggcttttaagaa 14032898  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||||||||||||| ||| ||||||||||| |||||  ||||| ||||  | |||||||||||||||||||    
T  14032899 ttgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctacattaaa 14032980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 14033332 - 14033475
Alignment:
Q  131 ttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctccaaaagcaattctccttgaagcta 224  Q
    |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||      ||||||||||||||||||||| ||| ||||||||    
T  14033332 ttctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagcta 14033431  T
Q  225 caattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
    ||| |||||  ||||| ||||  | |||||||||||||||||||    
T  14033432 caaatcctaacttttggcttttgtagaatcaattctacattaaa 14033475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 14379738 - 14379836
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  14379738 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 14379836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 31686915 - 31686817
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  31686915 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 31686817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 31786777 - 31786875
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  31786777 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 31786875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 40254422 - 40254520
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  40254422 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 40254520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 44282572 - 44282670
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  44282572 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 44282670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 2443793 - 2443695
Alignment:
Q  170 tgtttggtttggcttttcag-----cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||     |||||||||||||||| ||||||||| | |||||||||||||||| || || |||| || ||||||||||||||    
T  2443793 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctaca 2443695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 291
Target Start/End: Original strand, 37551592 - 37551684
Alignment:
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||||  |||||||||||||||||||||| ||| ||  || ||||||||||| || |||||||  |||||| |||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattctccaataaattttgtattttgattattacaac 37551684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 19860339 - 19860404
Alignment:
Q  251 aatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||| || |||| || ||||||| |||||||||||||||||||||||||||||| |||||    
T  19860339 aatcaattctccaataaaatttatattttgattattacaacctattattttcctttattgtccttt 19860404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 43695016 - 43695114
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||||  |||||| ||  || ||||||||||| |||||||||| ||||||| |||||||  ||| |||| |||||||||||| |||||    
T  43695016 tgaagctacaattcctaacttttgagttaactagaatcaattctccattaaattttatattttgattattattacccatta-tttcctttattgtccttt 43695114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 33598179 - 33598107
Alignment:
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaattt 271  Q
    ||||||||||||| || |||||||||  | |||||| |||||| |||  | |||||||||||||||| |||||    
T  33598179 tccaaaagcaattttctttgaagctaggaatcctagcttttgagtttggtagaatcaattctacatttaattt 33598107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 53663805 - 53663582
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----tt 192  Q
    ||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||| || |  ||||| |||||||||| ||      ||    
T  53663805 tgtttgttttggcttttgagcaacaagaagcacttctacaaacttcaaaagtggaaattgagtttttaacgccgtttgatttggctttttagaattgatt 53663706  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    ||||||||||||||||||| ||||| |||||||||||||||  ||||| |||||||  ||||||||||||||||||||| ||||||| ||||||||||||    
T  53663705 ctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctacattaaattttatattttgattattacaacc 53663606  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||||| ||||||    
T  53663605 tattattttcctttattacccttt 53663582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 309
Target Start/End: Complemental strand, 53404283 - 53404065
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggctttt-----cagc 190  Q
    |||| ||||||| ||||||| || |||||| |||||||||||| || ||||||  ||| ||||||||||||||||||||||||||||||||      |||    
T  53404283 ctgtatgttttgacttttcaacatcaagaatcacttctacaaatcttaaaagtaaaaaattgagttttcaatgttgtttggtttggcttttaagcatagc 53404184  T
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||  |||||| ||||||||| |||||||||||| ||||||| ||||||||||    
T  53404183 ttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttacattaaattttatattttgattattacaa 53404084  T
Q  291 cctattattttcctttatt 309  Q
    |||||| ||||||||||||    
T  53404083 cctattgttttcctttatt 53404065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 98 - 316
Target Start/End: Original strand, 45105735 - 45105957
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    ||||||||||| |||||||  | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  45105735 tgtttgttttgacttttcaaaaccaagaaacacttctacaaacctcgaaagtggaaattgagttttcaatgttgtttggtttggcttttcagaattgctt 45105834  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
     ||||||||| |||||||||| ||| |||||| ||||| ||| ||||| |||| || |||||||||||||||| ||||||||||||| ||||||| | ||    
T  45105835 atatcctccagaagcaattcttcttaaagctaaaattcatagcttttg-cttttctagaatcaattctacattcaatttaatattttgattattaaagcc 45105933  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||||||||| | ||||||    
T  45105934 tattattttcctttacttcccttt 45105957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 93 - 309
Target Start/End: Original strand, 38767713 - 38767935
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    ||||||||||||||| ||||||||||| |||||||   || || || ||||||||||| ||| || ||||||||||| ||||||||||| ||||| ||      
T  38767713 gagcctgtttgtttttgcttttcagcaccaagaagtgattttagaaccctcaaaagtgaaaaattaagttttcaatggtgtttggtttgacttttaagaa 38767812  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
       |||||||||||||||||||||| |||||||||||||||  ||||||||||| ||||||  |||||||||||||||||||||| ||||||| ||||||    
T  38767813 ttgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctacattaaattttatattttgattatt 38767912  T
Q  287 acaacctattattttcctttatt 309  Q
    |||||||||||||||||||||||    
T  38767913 acaacctattattttcctttatt 38767935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 22606536 - 22606307
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    ||||||| ||||||||||||||||||| |||||||   |||||||| ||||||||| | ||| |||| ||||||||| ||||||||||  ||||| ||      
T  22606536 gagcctgattgttttggcttttcagcaccaagaagtgattctacaaccctcaaaagagaaaaattgaattttcaatggtgtttggtttaacttttaagaa 22606437  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
       |||||||||||||||||||||| | | ||||||||||| |||||| ||||||||||||  |||||||||||| ||||||||| ||||||| ||||||    
T  22606436 ttgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattctatattaaattttatattttgattatt 22606337  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||| ||||||||||| ||||||||||||||    
T  22606336 acagcctattatttttctttattgcccttt 22606307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 95 - 309
Target Start/End: Original strand, 49723708 - 49723927
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc--- 190  Q
    |||| |||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||| ||        
T  49723708 gcctatttgttttggcttttcggcatcaagaatcacttctacaaacctcaaaagtgaaaaattgagtttccaatggtgtttggtttggcttttaagaatt 49723807  T
Q  191 --ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattac 288  Q
      |||||||||||||||| ||||||| || |||||||||||| ||| |||||   || || |||||||||||| ||||||||| ||||||| ||||||||    
T  49723808 gtttctatcctccaaaag-aattctcgttaaagctacaattcttagcttttggtatttctagaatcaattctatattaaattttatattttgattattac 49723906  T
Q  289 aacctattattttcctttatt 309  Q
    |||||||||||||||||||||    
T  49723907 aacctattattttcctttatt 49723927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 152 - 310
Target Start/End: Complemental strand, 30418514 - 30418350
Alignment:
Q  152 aaattgagttttcaatgttgtttgg-tttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgacttt 245  Q
    |||||||||||| |||| ||||||| |||||||||| |     | ||||||||||||||||||||| ||||| ||||||||| |||||  ||||  ||||    
T  30418514 aaattgagtttttaatggtgtttgggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagcttt 30418415  T
Q  246 cctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattg 310  Q
    ||| ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  30418414 cctagaatcaattctacattaaattttctattttgattattacaacctattattttcctttattg 30418350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 119 - 308
Target Start/End: Original strand, 28911529 - 28911724
Alignment:
Q  119 agcaagaagcacttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattc 212  Q
    |||||||||||||||||||| |||| ||||||  |||| ||||||| |||  ||||||||||||||| ||||     |||||| |||||||||||||||     
T  28911529 agcaagaagcacttctacaacacctgaaaagtcaaaatcgagttttgaatcatgtttggtttggcttatcagaattgcttctaccctccaaaagcaattg 28911628  T
Q  213 tccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttat 308  Q
    |   |||||||||||||||||  |||||| ||  ||  |||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||    
T  28911629 tggatgaagctacaattcctaacttttgagttaactaaaatcaattctccattaaattttatattttgattattacaacccattattttcctttat 28911724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 16203159 - 16203049
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||||||||| |  ||||||||||||||||||| |||||| ||  || ||||||||||| |||||||||| |||||||||||||||||||| ||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattctccattaaattttatattttaattattacaacccatta 16203060  T
Q  298 ttttcctttat 308  Q
    |||||||||||    
T  16203059 ttttcctttat 16203049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 39732843 - 39732961
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattattacaacctatta 39732942  T
Q  298 ttttcctttattgcccttt 316  Q
    ||||||||||| |||||||    
T  39732943 ttttcctttatcgcccttt 39732961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 50523936 - 50523818
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||  || ||||||||||| || ||||||||||||||| ||||||||||||| |||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaatttaatattttgattattacaacctgtta 50523837  T
Q  298 ttttcctttattgcccttt 316  Q
    |||||| ||||||||||||    
T  50523836 ttttccattattgcccttt 50523818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 5937908 - 5937790
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||||||||| |   |||||||||||||||||| |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattctccaataaattttatattttgattattacaacctatta 5937809  T
Q  298 ttttcctttattgcccttt 316  Q
    |||||| ||||| ||||||    
T  5937808 ttttcccttatttcccttt 5937790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 88 - 268
Target Start/End: Complemental strand, 52058433 - 52058247
Alignment:
Q  88 acttcgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggctttt 186  Q
    |||| |||||||||| ||||| |||||||||| ||| ||    ||||||||  |||||||||  |||  ||| ||||||||| ||||||||||| |||||    
T  52058433 acttagagcctgtttattttgacttttcagcaccaaaaaatgattctacaattctcaaaagtaaaaaactgaattttcaatggtgtttggtttgactttt 52058334  T
Q  187 cag-----cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
     ||     |||||||||||||||||||||| ||||||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  52058333 aagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 52058247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 28964044 - 28963816
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||| ||||||| || ||| |||   ||||||||   ||||||||| |||  |||||||| |||| ||||||||||| ||||| ||      
T  28964044 gagcctgtttggtttgacttttcaacaccaataagtgattctacaacattcaaaagtgaaaaactgagtttttaatggtgtttggtttgacttttaagaa 28963945  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        || |||||||||||||||||| | ||| ||||||||| |||||  || |  |||| || |||||||||||| |||||||||  |||||| ||||||    
T  28963944 ttgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattctatattaaattttctattttgattatt 28963845  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||| ||||||||||||||    
T  28963844 acaacctattatttt-ctttattgcccttt 28963816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 152 - 316
Target Start/End: Original strand, 26457093 - 26457262
Alignment:
Q  152 aaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttc 246  Q
    |||||||||||| || |||||| | |||| ||||||||     ||| |||||||||||| |||||    |||||||||||||| |||| |||||  ||      
T  26457093 aaattgagtttttaaagttgttagatttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagcttttgggttaa 26457192  T
Q  247 ctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    || ||||||||||| || ||||||| ||||||||||||||||| |||||||||| |||||||||| ||||    
T  26457193 ctagaatcaattctccaataaattttatattttaattattacatcctattatttccctttattgctcttt 26457262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 24038189 - 24038091
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  24038189 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 24038091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 24246618 - 24246716
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  24246618 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 24246716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 31431163 - 31431065
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  31431163 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 31431065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 48407038 - 48407103
Alignment:
Q  251 aatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  48407038 aatcaattctacattaaattttatattttgattattacaatctattatttttctttattgcccttt 48407103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 51677153 - 51677253
Alignment:
Q  216 ttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccctt 315  Q
    ||||||||||||||||||  |||||| ||| || ||||||||| | |||||||||| ||||||||||||||||| |  ||||||||| |||||| |||||    
T  51677153 ttgaagctacaattcctaacttttgagtttactagaatcaattttccattaaattttatattttaattattacagctcattattttcttttatttccctt 51677252  T
Q  316 t 316  Q
    |    
T  51677253 t 51677253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 39383085 - 39382987
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||  || | |||||||| ||||||||||||||    
T  39383085 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctaca 39382987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 18140475 - 18140550
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  18140475 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 18140550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 49127688 - 49127763
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| |||||||||||||||||| |  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  49127688 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 49127763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 29386058 - 29385991
Alignment:
Q  241 actttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttat 308  Q
    ||||| || |||||||||||||| |||||||  |||||| ||||||||||||||||||||| ||||||    
T  29386058 acttttctagaatcaattctacaataaattttttattttgattattacaacctattatttttctttat 29385991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 51834346 - 51834248
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||| |||||||     ||||||||||||||||||||||||||| | |||||||||||||||  || || |||| || ||||||||| ||||    
T  51834346 tgtttggtttgacttttcagaattgcttctatcctccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattataca 51834248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 225
Target Start/End: Original strand, 48406936 - 48407036
Alignment:
Q  131 ttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattctccttgaagcta 224  Q
    |||||||| |||||||| || ||| |||||||||||||| |||||| |||| ||||| ||     ||||||||||||||| |||||| ||||||||||||    
T  48406936 ttctacaaccctcaaaaatgaaaaattgagttttcaatggtgtttgatttgacttttaagaattgcttctatcctccaaatgcaattatccttgaagcta 48407035  T
Q  225 c 225  Q
    |    
T  48407036 c 48407036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 301
Target Start/End: Original strand, 8503819 - 8503904
Alignment:
Q  216 ttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattatttt 301  Q
    ||||||||||||||||||  |||||  ||  || ||||||||| | || ||||||| ||||||| ||||||| |||||||||||||    
T  8503819 ttgaagctacaattcctaacttttgtgttaactagaatcaattttccaataaattttatattttgattattataacctattatttt 8503904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 29810274 - 29810222
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttga 241  Q
    ||||| |||||| ||||| | ||||||||||||||||||||| ||||||||||    
T  29810274 gcttccatcctctaaaaggagttctccttgaagctacaattcatagtttttga 29810222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 186
Target Start/End: Complemental strand, 29386209 - 29386114
Alignment:
Q  91 tcgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggctttt 186  Q
    ||||| ||||||| |||||||||||| ||  ||||||   |||||||| | ||||||||| ||| ||||||||  ||| ||||| |||||||||||    
T  29386209 tcgagtctgtttggtttggcttttcaacacaaagaagtgattctacaaccttcaaaagtgaaaactgagttttttatggtgtttagtttggctttt 29386114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 123; Significance: 4e-63; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 99 - 316
Target Start/End: Complemental strand, 8958672 - 8958450
Alignment:
Q  99 gtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----ttc 193  Q
    |||||||||| |||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| ||||||||      |||    
T  8958672 gtttgttttgacttttcagcaacaagaaacacttctacaaacttcaaaagtgaaaattgagttttcaatgttatttggtttgacttttcagaattgtttc 8958573  T
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacct 293  Q
    ||||||| |||| ||||||||||| ||||||||||||||| |||||| ||||||| |||||||||||||| ||||||||| ||||| ||||| |||||||    
T  8958572 tatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacactaaatttaaaattttgattataacaacct 8958473  T
Q  294 attattttcctttattgcccttt 316  Q
    |||||||| ||||||| ||||||    
T  8958472 attatttttctttattacccttt 8958450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 95 - 316
Target Start/End: Complemental strand, 11018602 - 11018376
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----g 189  Q
    ||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||     |    
T  11018602 gcctgtttgttttggtttttcagcaacaagaagcacttctacaagcctcaaaagtggaaattgaattttcaatgttgtttggtttggtttttcagaattg 11018503  T
Q  190 cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattaca 289  Q
     |||||||||| |||| ||||| ||||| |||||||||||  ||| || || ||||| | ||||||||| |||||||||||| ||||||||||||||| |    
T  11018502 tttctatcctcaaaaaacaattatccttaaagctacaatttatagcttatggctttcatagaatcaattatacattaaattttatattttaattattaga 11018403  T
Q  290 acctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||| |||||    
T  11018402 acctattattttcctttattgtccttt 11018376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 41040312 - 41040083
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    |||| ||||||||||||||||||||||  ||||||   |||||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||| ||      
T  41040312 gagcatgtttgttttggcttttcagcactaagaagtgattctacaaccctcaaaagtgaaaaattgagttttcaatggtgtttggtttggcttttaagaa 41040213  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
       ||||||||||||||||  |||| ||||||||||||||| |||||| ||||| |||| |  ||||||||||||| |||||||| | ||||| ||||||    
T  41040212 ttgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctacgttaaattttaaattttgattatt 41040113  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||| ||||||||||||||    
T  41040112 acaacctattatttttctttattgcccttt 41040083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 316
Target Start/End: Complemental strand, 53838 - 53614
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    ||||| ||||||||||||||||| |||||||   || ||||||| | ||||||| |||||||| ||| || ||||||||||||| |||||||     |||    
T  53838 ctgttcgttttggcttttcagcatcaagaagtcattttacaaacttgaaaagtgaaaattgagcttttaaagttgtttggtttgccttttcataattgct 53739  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||||||||| |  ||||||||||||||||||| |||||  ||  ||  |||||||| | || ||||||| |||||||||||||||||||    
T  53738 tctatcctccaaaagcaattatggttgaagctacaattcctagcttttgggttaactataatcaattatccaataaattttatattttaattattacaac 53639  T
Q  292 ctattattttcctttattgcccttt 316  Q
    |||||||||  ||||||||||||||    
T  53638 ctattatttctctttattgcccttt 53614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 316
Target Start/End: Original strand, 2526233 - 2526434
Alignment:
Q  120 gcaagaagcacttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattct 213  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||| ||  ||||||||||||||||||||     |||||| || ||||||||||||||    
T  2526233 gcaaaaagcacttctacaacacctcaaaagtgaaaattgagttttctatcatgtttggtttggcttttcagaattgcttctaccccccaaaagcaattct 2526332  T
Q  214 ccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccc 313  Q
       |||||||||||||||||| |||||| ||  || ||||||||||| |||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||    
T  2526333 ggatgaagctacaattcctagcttttgagttaactagaatcaattctccatt-aattttatattttgattattacaacccattattttcctttattgtcc 2526431  T
Q  314 ttt 316  Q
    |||    
T  2526432 ttt 2526434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 93 - 316
Target Start/End: Original strand, 31905352 - 31905581
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||||||||||||||| |||||||   ||||| || | ||||||||| ||| ||||||||| | || |||||| |||| ||||| ||      
T  31905352 gagcctgtttggtttggcttttcagcaccaagaagtgattctagaaccttcaaaagtgaaaaattgagtttttactggtgtttgttttgacttttaagaa 31905451  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||||||||||||||||| ||||| ||||||||| |||||  || |  |||| ||  |||||||| ||||||||||||  |||||| ||||||    
T  31905452 ttgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttatagcttttctacaatcaattttacattaaattttctattttgattatt 31905551  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    | || |||||||||||||||||||||||||    
T  31905552 aaaatctattattttcctttattgcccttt 31905581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 10900165 - 10900283
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||   |||||||||||||||||  |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctccaataaattttatattttgattattacaacctatta 10900264  T
Q  298 ttttcctttattgcccttt 316  Q
    |||||||||||||||||||    
T  10900265 ttttcctttattgcccttt 10900283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 41742294 - 41742169
Alignment:
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||||||||||||||| ||||| |||||| || |||||  ||||  |||| || ||||||||||||||||||||||  |||||| ||| ||||||    
T  41742294 ttctatcctccaaaagcaattgtccttaaagctaaaaatcctaacttttagcttttctagaatcaattctacattaaattttctattttgattgttacaa 41742195  T
Q  291 cctattattttcctttattgcccttt 316  Q
    ||||||||||| ||||||||||||||    
T  41742194 cctattatttttctttattgcccttt 41742169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 40979452 - 40979570
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||   |||||||||||||||||| |||||| ||  ||  |||||||||| || ||||||| ||||||| |||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctataatcaattctccaataaattttatattttgattattacaacctatta 40979551  T
Q  298 ttttcctttattgcccttt 316  Q
    || ||||||||||||||||    
T  40979552 ttctcctttattgcccttt 40979570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 99 - 209
Target Start/End: Complemental strand, 32872751 - 32872636
Alignment:
Q  99 gtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gcttc 193  Q
    |||||||||| |||||||||| |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||| |||| ||||| |     |||||    
T  32872751 gtttgttttgacttttcagcaacaagaaacacttctataagtctcaaaagtggaaattgagttttcaatgttgtttgatttgactttttaaaattgcttc 32872652  T
Q  194 tatcctccaaaagcaa 209  Q
    ||||||||||||||||    
T  32872651 tatcctccaaaagcaa 32872636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 21022808 - 21022627
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||      
T  21022808 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaa 21022709  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||| ||||||||| ||| ||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  21022708 ttgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 21022627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 27739527 - 27739346
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| ||| ||||||| |||  ||| ||||||||| ||||||||||| ||||| ||      
T  27739527 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaacccttaaaagtgaaaagctgaattttcaatggtgtttggtttgacttttaagaa 27739428  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
       |||||||||||||||||||||| ||| ||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  27739427 ttgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 27739346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 39237072 - 39236891
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||      
T  39237072 gagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaa 39236973  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||||||| ||||| ||| ||||||||||| |||||  ||||||||||  | |||||||||||||||||||    
T  39236972 ttgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctacattaaa 39236891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 100 - 316
Target Start/End: Original strand, 19356429 - 19356652
Alignment:
Q  100 tttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat--tgagttttcaatgttgtttggtttggcttttcagc-----tt 192  Q
    |||| |||||||||||| || |||||||   |||||||| | |||||| || |||   |||||| | |||| ||||||||||||||||| ||      ||    
T  19356429 tttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaaatgaaaaaactgagttcttaatggtgtttggtttggcttttaagagttgatt 19356528  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacc 292  Q
    |||||||| |||||||||| ||||| || |||||| |||| | || | | ||| || ||||||||||||||||||||||  |||||| |||||||||| |    
T  19356529 ctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctacattaaattttctatttttattattacaatc 19356628  T
Q  293 tattattttcctttattgcccttt 316  Q
    ||||||||| | ||||||||||||    
T  19356629 tattatttttcattattgcccttt 19356652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 19375471 - 19375361
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||   |||||||||||||||||  |||||| ||  || |||||||||||  | ||||||| ||||||| |||||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattctctaataaattttatattttgattattacaacctatta 19375372  T
Q  298 ttttcctttat 308  Q
    |||||||||||    
T  19375371 ttttcctttat 19375361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 198 - 308
Target Start/End: Complemental strand, 33387761 - 33387651
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    |||||||| |||||||  ||||||||||||||||||  |||||| ||  |   |||||||||| |||||||||| |||||||||||||||||||| ||||    
T  33387761 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttgaccataatcaattctccattaaattttatattttaattattacaacccatta 33387662  T
Q  298 ttttcctttat 308  Q
    |||||||||||    
T  33387661 ttttcctttat 33387651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 33229164 - 33229307
Alignment:
Q  131 ttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctccaaaagcaattctccttgaagcta 224  Q
    |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||      ||||||||||||||||||||| ||| ||||||||    
T  33229164 ttctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagcta 33229263  T
Q  225 caattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
    ||| |||||  ||||| ||||  | |||||||||||||||||||    
T  33229264 caaatcctaacttttggcttttgtagaatcaattctacattaaa 33229307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 29542569 - 29542471
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  29542569 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 29542471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 3260943 - 3260868
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  3260943 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 3260868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 268
Target Start/End: Complemental strand, 7073445 - 7073270
Alignment:
Q  99 gtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttca-----gctt 192  Q
    ||||| |||| |||||||| | |||||||   |||||||| ||||||||||| |||  ||| |||| |||| ||||||||||||||||| |     ||||    
T  7073445 gtttggtttgacttttcagtaccaagaagtgattctacaaccctcaaaagtgaaaaactgaatttttaatggtgtttggtttggcttttaaaaattgctt 7073346  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
    ||||   ||||||| |||| ||||||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  7073345 ctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 7073270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 14082914 - 14082989
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  14082914 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 14082989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 42663457 - 42663532
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  42663457 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 42663532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 33115063 - 33115132
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  33115063 tatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 33115132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 21022042 - 21022185
Alignment:
Q  131 ttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctccaaaagcaattctccttgaagcta 224  Q
    |||||||| ||||||||||| |||  ||| ||||||||| ||||||||||||||||| ||      ||||||||||||||| ||||| ||| ||||| ||    
T  21022042 ttctacaaccctcaaaagtgaaaagctgaattttcaatggtgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagtta 21022141  T
Q  225 caattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
    ||| |||||| ||||| ||||  | |||| ||||||||||||||    
T  21022142 caaatcctagcttttggcttttgtagaataaattctacattaaa 21022185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 33082919 - 33082859
Alignment:
Q  250 gaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattg 310  Q
    ||||||||||| |||  ||||| |||||||||||||||||||| |||||||| ||||||||    
T  33082919 gaatcaattctccatctaattttatattttaattattacaaccaattatttttctttattg 33082859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 25256827 - 25256772
Alignment:
Q  250 gaatcaattctacattaaatttaatattttaattattacaacctattattttccttt 306  Q
    ||||||||| | ||| |||||| ||||||||||||||||||||  ||||||||||||    
T  25256827 gaatcaattatccatgaaattttatattttaattattacaacc-cttattttccttt 25256772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 25320618 - 25320563
Alignment:
Q  250 gaatcaattctacattaaatttaatattttaattattacaacctattattttccttt 306  Q
    ||||||||| | ||| |||||| ||||||||||||||||||||  ||||||||||||    
T  25320618 gaatcaattatccatgaaattttatattttaattattacaacc-cttattttccttt 25320563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 29367522 - 29367450
Alignment:
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaattt 271  Q
    ||||||||||||| || ||||||||| || |||||  |||||| |||  | |||||||||||||||| |||||    
T  29367522 tccaaaagcaattttctttgaagctagaaatcctaacttttgagtttggtagaatcaattctacatttaattt 29367450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 91461 - 91681
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    |||||| ||||| ||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |     | |    
T  91461 ctgtttattttgacttttcagcaataagaagtacttctacaaacctcaaaagtggaaattgagttttcaatgtagtttggtttggctttttagaattgat 91560  T
Q  192 tctatcctccaaaagca--attctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattaca 289  Q
    |||||||||||||||||  ||||| ||| |||||||||||||||  ||||| ||||| | |||  ||||||||||||| ||| ||||||| |||||||||    
T  91561 tctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctacattaacttttatattttgattattaca 91660  T
Q  290 acctattattttcctttattg 310  Q
    |||||||||||||||||||||    
T  91661 acctattattttcctttattg 91681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 297
Target Start/End: Original strand, 16742 - 16947
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    |||||||||||||||||||| || ||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |     | |    
T  16742 ctgtttgttttggcttttcaacaacaagaagtacttctacaaatctcgaaagtggaaattgagttttcaatgttgtttggtttggctttttagaattgat 16841  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    ||||||||||||||||||||||  || ||||||||||||||| ||||||  |||| | |||  ||||||||||||| ||| ||||||| |||||||||||    
T  16842 tctatcctccaaaagcaattctaattaaagctacaattcctaatttttggttttcatagaacaaattctacattaacttttatattttgattattacaac 16941  T
Q  292 ctatta 297  Q
    ||||||    
T  16942 ctatta 16947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 47656064 - 47655835
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtgga-aattgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||||||||||| || |||||||   || ||||| |||||||||||   || |||||||| |||| ||||||||||||||||| ||      
T  47656064 gagcctgtttggtttggcttttcaacaccaagaagtgattatacaaccctcaaaagtgactaactgagtttttaatgatgtttggtttggcttttaagaa 47655965  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||||||||||||||||| ||||| ||||||||| |||||| || | ||||| || ||||||||||||||||||||||  |||||| | ||||    
T  47655964 ttgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctacattaaattttctattttgactatt 47655865  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||||    
T  47655864 acaacctattattttcctttattgcccttt 47655835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 93 - 316
Target Start/End: Complemental strand, 13510116 - 13509887
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||||||||||| || ||||||    |||||||| | ||||||||| |||  |||||||| |||| |||||||||| |||||| ||      
T  13510116 gagcctgtttggtttggcttttcaacatcaagaaatgattctacaaccttcaaaagtgaaaaactgagtttttaatggtgtttggtttagcttttaagaa 13510017  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||||||||||||||||| ||||| |||||| || |||||| || |  |||| || ||||||||||||||||||||||  |||||| ||||||    
T  13510016 ttgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctacattaaattttctattttgattatt 13509917  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||||    
T  13509916 acaacctattattttcctttattgcccttt 13509887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 4485353 - 4485128
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----tt 192  Q
    ||||| ||||| |||||||||   |||||||||||| |||||| |||||||||||||||||||||||||| |||||||||| | | ||| ||      ||    
T  4485353 tgtttcttttgacttttcagcgataagaagcacttcaacaaacatcaaaagtggaaattgagttttcaatattgtttggttagacattttagagttgatt 4485254  T
Q  193 ctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaa--atttaatattttaattattacaa 290  Q
    ||||||||||||| ||||||||||| || |||||||| |||  ||||| ||||||| ||||||||| ||||||||   |||  |||||| |||||||| |    
T  4485253 ctatcctccaaaaacaattctccttaaaactacaatttctaacttttggctttcctagaatcaattatacattaatttttttttattttgattattacga 4485154  T
Q  291 cctattattttcctttattgcccttt 316  Q
    ||||||||||| ||||||||||||||    
T  4485153 cctattatttttctttattgcccttt 4485128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 122 - 316
Target Start/End: Original strand, 11829028 - 11829228
Alignment:
Q  122 aagaagcacttctacaaacct-caaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattctcc 215  Q
    |||||||||||||||||  || |||||||| ||||||||||||||||  ||||||||||| ||||| ||     ||||||||||||||||||||||||      
T  11829028 aagaagcacttctacaacgcttcaaaagtgaaaattgagttttcaatcatgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctgg 11829127  T
Q  216 ttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccctt 315  Q
     ||||| || ||||||||  |||||| ||  || ||||||||||| |||||||||| |||||||| ||||||||||| ||||||||||||||||| ||||    
T  11829128 atgaaggtataattcctaacttttgagttaactagaatcaattctccattaaattttatattttagttattacaacccattattttcctttattgtcctt 11829227  T
Q  316 t 316  Q
    |    
T  11829228 t 11829228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 97 - 316
Target Start/End: Original strand, 6706060 - 6706283
Alignment:
Q  97 ctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc----- 190  Q
    ||||||| ||||||||||||| | |  |||| | |||||||| | | ||||||| ||| |||| |||| |||| ||||| ||||||||||| ||          
T  6706060 ctgtttggtttggcttttcagtacc--gaagtaattctacaatctttaaaagtgaaaaattgaatttttaatggtgtttagtttggcttttaagaattga 6706157  T
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||||||||| ||||| ||||| ||||||||| |||||| || |  |||| || ||||||||||||||||||||||  ||||| |||||||||||    
T  6706158 ttctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctacattaaattttctatttcaattattacaa 6706257  T
Q  291 cctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||    
T  6706258 cctattattttcctttattgcccttt 6706283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 98 - 316
Target Start/End: Complemental strand, 11051333 - 11051109
Alignment:
Q  98 tgtttgttttggcttttcagcagcaagaagcacttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca-----gct 191  Q
    |||||||||||| ||||   || ||||||||| |||||||  ||||||| |||| ||||||||||||||||  ||||||||||| |||||||     |||    
T  11051333 tgtttgttttggtttttttccaacaagaagcaattctacacgacctcaatagtgaaaattgagttttcaatcatgtttggtttgacttttcaaaattgct 11051234  T
Q  192 tctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaac 291  Q
    |||||||||||||| ||||| |  ||||| ||||||||||||  |||||  |   || ||||||||||| |||||||||| ||||||| ||||||||||     
T  11051233 tctatcctccaaaaacaattatggttgaatctacaattcctaacttttgggtaaactagaatcaattctccattaaattttatattttgattattacaaa 11051134  T
Q  292 ctattattttcctttattgcccttt 316  Q
     ||||||||||||||||| ||||||    
T  11051133 ttattattttcctttattacccttt 11051109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 130 - 316
Target Start/End: Original strand, 44740105 - 44740296
Alignment:
Q  130 cttctacaaacctcaaaagtggaa-attgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctccaaaagcaattctccttgaagct 223  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||||||||||| ||||| ||      ||||||| |||| ||| || |||||||  ||||    
T  44740105 cttctacaaacctcaaaagtgaaagattgagttt-caatggtgtttggtttgccttttaagaattgtttctatcttccataagaaactctccttatagct 44740203  T
Q  224 acaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||| ||| |||||  |||| | ||||||||||||| |||||||| ||||||| |||||||||||||||||||||||| | |||||||||    
T  44740204 acaattcatagcttttggttttcatagaatcaattctacgttaaattttatattttcattattacaacctattattttcctattttgcccttt 44740296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 35604736 - 35604917
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcag-- 189  Q
    |||||||||||||||  |||||||||| |||||||   |||||||| ||||||||||| |||  ||||||||||||| |||||| |||| ||||| ||      
T  35604736 gagcctgtttgttttaacttttcagcaccaagaagtgattctacaaccctcaaaagtgaaaaactgagttttcaatggtgtttgatttgacttttaagaa 35604835  T
Q  190 ---cttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
       |||||||||||||||| ||||| ||||||||||||||| |  ||| ||||||||||  | |||||||||||||||||||    
T  35604836 ttgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctacattaaa 35604917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 3850911 - 3850812
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||||||||| |||| |||||| ||  || ||||||||||| || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  3850911 tgaagctacaatttctagcttttgagttatctagaatcaattctccaataaattttatattttgattattacaacctattattttcctttattgcccttt 3850812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 308
Target Start/End: Original strand, 7385251 - 7385368
Alignment:
Q  191 ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaa 290  Q
    ||||||||| ||||||||||| || || ||||||||| ||||| ||| |  ||||||| ||||||||| ||||||||||||  |||||| ||||||||||    
T  7385251 ttctatccttcaaaagcaattatctttaaagctacaaatcctaatttctagctttcctagaatcaattttacattaaattttttattttgattattacaa 7385350  T
Q  291 cctattattttcctttat 308  Q
    ||||||||||| ||||||    
T  7385351 cctattattttactttat 7385368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 46406343 - 46406524
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| ||  |||||||| || |||||||   |||||||| | ||||||||| ||| |||| ||||||||| ||||||||||||||||| ||      
T  46406343 gagcctgtttggttcagcttttcaccatcaagaagtgattctacaaccttcaaaagtgaaaagttgaattttcaatggtgtttggtttggcttttaagaa 46406442  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
        ||||||||||||||||||||| ||| ||||||||||| || ||| ||||| ||||  | |||||||||||||||||||    
T  46406443 ttgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctacattaaa 46406524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 316
Target Start/End: Complemental strand, 46033854 - 46033624
Alignment:
Q  95 gcctgtttgttttggcttttcagcagcaagaagcacttctacaaa-cctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca----- 188  Q
    ||||||||||||||||||||   ||||||||||| ||||| |||  ||||| ||||  ||||||||||||||||  |||||| |||| |||||||         
T  46033854 gcctgtttgttttggctttttt-cagcaagaagcgcttctgcaacgcctcagaagtaaaaattgagttttcaatcatgtttgatttgacttttcaaaatt 46033756  T
Q  189 gcttctatcctccaaaagcaattctccttgaagctaca----attcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaatta 284  Q
    ||||||||||| ||||| |||||||| |||||| ||||    ||||| |  |||||| ||   | ||||||||||| || ||||||  ||||||| ||||    
T  46033755 gcttctatccttcaaaaacaattctcattgaagttacaatacattcccaacttttgagttaattagaatcaattctccaataaattgtatattttgatta 46033656  T
Q  285 ttacaacctattattttcctttattgcccttt 316  Q
    ||||||| ||||||||||||||||||| ||||    
T  46033655 ttacaacatattattttcctttattgctcttt 46033624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 24075576 - 24075673
Alignment:
Q  219 aagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||  |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||||||||||||||| |||||||||||||    
T  24075576 aagctacaattcctaacttttgatttaactagaatcaattctccaataaattttatattttgattattacaacctattattttcatttattgcccttt 24075673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 316
Target Start/End: Original strand, 1762251 - 1762369
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||  ||||||||||||||||||  |||| | ||| || |||||||||||  ||||||||| ||| ||||||| ||||| |  ||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattctctattaaattttataatttaatttttacagctcatta 1762350  T
Q  298 ttttcctttattgcccttt 316  Q
    ||||||||||||| |||||    
T  1762351 ttttcctttattgtccttt 1762369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 15353306 - 15353404
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  15353306 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 15353404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 26821460 - 26821558
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  26821460 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 26821558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 36496179 - 36496081
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  36496179 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 36496081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 38627616 - 38627714
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  38627616 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 38627714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 38843229 - 38843327
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  38843229 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 38843327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 50979363 - 50979265
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  50979363 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 50979265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 252 - 316
Target Start/End: Original strand, 50030915 - 50030979
Alignment:
Q  252 atcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||    
T  50030915 atcaatcctacattaaattttctattttgattattacaacctattattttcctttattgcccttt 50030979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 170 - 260
Target Start/End: Complemental strand, 7593331 - 7593236
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattct 260  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| |||||||||||    
T  7593331 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 7593236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 41512196 - 41512295
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||||  |||||| ||  ||  ||||| |||| || ||||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  41512196 tgaagctacaattcctaacttttgagttagctataatcatttctccaataaattttatattttgattattacaacctattattttcctttattgtccttt 41512295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 51488600 - 51488525
Alignment:
Q  188 agcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  51488600 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 51488525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 5271631 - 5271533
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||  || | |||||||| ||||||||||||||    
T  5271631 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctaca 5271533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 217 - 311
Target Start/End: Complemental strand, 42137747 - 42137653
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgc 311  Q
    |||| ||||||||||||| |||||| ||  || ||||||||||| || ||||||| ||||||| ||||||||||| |||||||||| ||||||||    
T  42137747 tgaatctacaattcctagcttttgagttaactagaatcaattctccaataaattttatatttttattattacaacttattattttcatttattgc 42137653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 194 - 263
Target Start/End: Complemental strand, 27000365 - 27000296
Alignment:
Q  194 tatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  27000365 tatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 27000296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 31100512 - 31100429
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattt 300  Q
    |||||||||||||||||| |||||| ||  || ||||||||||| |||||||||| ||||||| |||||||| ||| |||||||    
T  31100512 tgaagctacaattcctagcttttgagttaactagaatcaattctccattaaattttatattttgattattactacccattattt 31100429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 217 - 284
Target Start/End: Original strand, 27065077 - 27065144
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaatta 284  Q
    ||||||||||||||||||||||||| ||  ||  |||||||||| |||||||||| ||||||||||||    
T  27065077 tgaagctacaattcctagtttttgagttaactaaaatcaattctccattaaattttatattttaatta 27065144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 263
Target Start/End: Original strand, 27575997 - 27576071
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    ||||||||||||||||||||||||||| | ||| |||||||  ||| || ||||||| || ||||||||||||||    
T  27575997 gcttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctaca 27576071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 316
Target Start/End: Complemental strand, 11051108 - 11051044
Alignment:
Q  252 atcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||||| |||||||||| ||||||| ||||||| ||  ||||||||||||||||| ||||||    
T  11051108 atcaattctccattaaattttatattttgattattataaattattattttcctttattacccttt 11051044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 253 - 316
Target Start/End: Original strand, 49430721 - 49430784
Alignment:
Q  253 tcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||| || ||||||| ||||||| ||||||||||  |||||||||| |||||||||||||    
T  49430721 tcaattctccaataaattttatatttttattattacaatttattattttcttttattgcccttt 49430784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 251 - 316
Target Start/End: Original strand, 27416651 - 27416715
Alignment:
Q  251 aatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||| || ||| ||| |||||| | ||||||||| |||||||||||||||||||||||||    
T  27416651 aatcaattctccaataacttttatatttga-ttattacaatctattattttcctttattgcccttt 27416715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 188
Target Start/End: Original strand, 49430411 - 49430480
Alignment:
Q  120 gcaagaagcacttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttca 188  Q
    |||| |||||||||||| | | || ||||||| ||||||||||||||||  ||||||||||| |||||||    
T  49430411 gcaataagcacttctacgacatcttaaaagtgaaaattgagttttcaattatgtttggtttgacttttca 49430480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 276 - 316
Target Start/End: Original strand, 27067246 - 27067286
Alignment:
Q  276 ttttaattattacaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||| | ||||||||||||||||| |||||    
T  27067246 ttttaattattacaatccattattttcctttattgtccttt 27067286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 45179418 - 45179482
Alignment:
Q  251 aatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccctt 315  Q
    ||||||||||  || |||||| ||||||||||||||| ||||  |||||||||||| ||| ||||    
T  45179418 aatcaattctcaatcaaattttatattttaattattagaacccgttattttcctttgttgtcctt 45179482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 120 - 316
Target Start/End: Original strand, 4146761 - 4146962
Alignment:
Q  120 gcaagaagcacttctacaa-acctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcag-----cttctatcctccaaaagcaattct 213  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||| ||  ||||||||||||||||||||     |||||| || ||||||||||||||    
T  4146761 gcaaaaagcacttctacaacacctcaaaagtgaaaattgagttttctatcatgtttggtttggcttttcagaattgcttctaccccccaaaagcaattct 4146860  T
Q  214 ccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgccc 313  Q
       |||||||||||||||||| |||||| ||  || ||||||||||| |||| ||||| ||||||| |||||||||||| ||||||||||||||||| ||    
T  4146861 ggatgaagctacaattcctagcttttgagttaactagaatcaattctccatt-aattttatattttgattattacaacccattattttcctttattgtcc 4146959  T
Q  314 ttt 316  Q
    |||    
T  4146960 ttt 4146962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 315
Target Start/End: Original strand, 30134180 - 30134297
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||  |||||||||||||| |||| |||||| ||  |  ||||||||||| |||||||||| |||||||||||||||||||||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagcttttgagttaaccagaatcaattctccattaaattttatattttaattattacaacctatta 30134279  T
Q  298 ttttcctttattgccctt 315  Q
    ||||||||||||| ||||    
T  30134280 ttttcctttattgtcctt 30134297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 92 - 268
Target Start/End: Complemental strand, 21517534 - 21517352
Alignment:
Q  92 cgagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc 190  Q
    |||||||||||| ||  |||||||| || |||||||   |||||||| ||||||||||| ||| |||| ||||||||| ||||||||||| ||||| ||     
T  21517534 cgagcctgtttggttcagcttttcaccaccaagaagtgattctacaaccctcaaaagtgaaaagttgaattttcaatggtgtttggtttgacttttaaga 21517435  T
Q  191 -----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaa 268  Q
         ||||||||||||||||||||| ||| ||||||||||| |||||| ||||| ||||  | |||||||||||||||||||    
T  21517434 attgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctacattaaa 21517352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 308
Target Start/End: Original strand, 10683129 - 10683310
Alignment:
Q  131 ttctacaaacctcaaaagtggaaattgagttttcaatgttgtttggtttggcttttcagc-----ttctatcctccaaaagcaattctccttgaagctac 225  Q
    |||||||| | ||||||||| ||| ||| |||| |||| ||||||||||||||||| ||      |||||||||| ||||  |||| ||||| |||||||    
T  10683129 ttctacaaccttcaaaagtg-aaactgaatttttaatggtgtttggtttggcttttaagaattgattctatcctctaaaattaattatccttaaagctac 10683227  T
Q  226 aattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttat 308  Q
    || |||||  || |   ||| || ||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||    
T  10683228 aaatcctaacttctagtttttctagaatcaattctacattaaattttctattttgattattacaacctattattttcctttat 10683310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 316
Target Start/End: Complemental strand, 20838560 - 20838442
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||||||||||  |||||||||||| |||||  |||||| ||| ||  |||||||||| || ||||| | ||||||| |||||||| ||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattctccaataaatcttatattttgattattacgacctatta 20838461  T
Q  298 ttttcctttattgcccttt 316  Q
     ||||||||||||| ||||    
T  20838460 gtttcctttattgctcttt 20838442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 290
Target Start/End: Original strand, 365513 - 365716
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    |||| |||||| |||||||||| ||||  |||||    |||||||| | ||||||||| ||| ||||||||| |||| ||||||||||| ||||| ||      
T  365513 gagcatgtttggtttggctttttagcactaagaaatgattctacaatcttcaaaagtgaaaaattgagtttttaatggtgtttggtttgacttttaagaa 365612  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||| ||||||||||||| ||||| ||||||||| |||||  || | ||||| || || |||||| ||||||||||||  |||||| ||||||    
T  365613 ttgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttacattaaattttctattttgattatt 365712  T
Q  287 acaa 290  Q
    ||||    
T  365713 acaa 365716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 30018851 - 30018949
Alignment:
Q  170 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 263  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||  || | |||||||| ||||||||||||||    
T  30018851 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctaca 30018949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 264
Target Start/End: Complemental strand, 31746263 - 31746188
Alignment:
Q  189 gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacat 264  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||  || || |||| || |||||||||||||||    
T  31746263 gcttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacat 31746188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 93 - 316
Target Start/End: Original strand, 37619 - 37846
Alignment:
Q  93 gagcctgtttgttttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttcagc- 190  Q
    ||||||||||| |||||||||||| || |||||||   |||||||| | ||||||||| ||| ||||||||| |||| ||||||||||||||||| ||      
T  37619 gagcctgtttggtttggcttttcaacaccaagaagtgattctacaaccttcaaaagtgaaaaattgagtttttaatggtgtttggtttggcttttaagaa 37718  T
Q  191 ----ttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattatt 286  Q
        ||||||||||||||| ||||| ||||| ||||||||| |  ||| || |  |||| || |||||||||||| |||||||||  |||||| ||||||    
T  37719 ttgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattctaaattaaattttctattttgattatt 37816  T
Q  287 acaacctattattttcctttattgcccttt 316  Q
    ||||||||||||||||||||||||||||||    
T  37817 acaacctattattttcctttattgcccttt 37846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 105 - 316
Target Start/End: Original strand, 4025 - 4241
Alignment:
Q  105 tttggcttttcagcagcaagaagcacttctacaaacctcaaaagtggaaat-tgagttttcaatgttgtttggtttggcttttcagc-----ttctatcc 198  Q
    ||||||||||||||| ||||||  | |||||||| | ||||||||| |||  ||| |||| |||| ||||| ||||||||||| ||      ||||||||    
T  4025 tttggcttttcagcaccaagaatga-ttctacaaccttcaaaagtgaaaaactgaatttttaatggtgtttagtttggcttttaagaattgattctatcc 4123  T
Q  199 tccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattat 298  Q
    || |||||||||| || || |||||| || |||||| || |  |||| ||  |||||||||||||||||||||  |||||| ||||||||||||||||||    
T  4124 tcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctacattaaattttctatttttattattacaacctattat 4223  T
Q  299 tttcctttattgcccttt 316  Q
    ||||||||||||||||||    
T  4224 tttcctttattgcccttt 4241  T

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Target: scaffold0097 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 131 - 316
Target Start/End: Complemental strand, 33200 - 33009
Alignment:
Q  131 ttctacaaacctcaaaagtggaaa-ttgagttttcaatgttgtttggtttggcttttca-----gcttctatcctccaaaa-gcaattctccttgaagct 223  Q
    |||||||| |||||||| || ||| |||||||||||||| | ||| ||||| ||||| |     |||||||| |||||||| |||||| ||||| |||||    
T  33200 ttctacaatcctcaaaaatgaaaaattgagttttcaatgatatttagtttgacttttaaaaattgcttctattctccaaaaagcaattatcctt-aagct 33102  T
Q  224 acaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||| | |||  |||||  ||| || |||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  33101 acaaattctaacttttggtttttctagaatcaattctaaattaaattttatattttgattattacaacctattattttcctttattgcccttt 33009  T

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Target: scaffold0184 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 9740 - 9641
Alignment:
Q  217 tgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctattattttcctttattgcccttt 316  Q
    |||||||||||||||||  |||||| ||  || ||||||||||| || ||||||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  9740 tgaagctacaattcctaacttttgagttagctagaatcaattctccaataaattttatattttgattattacaatctattatttttctttattgcccttt 9641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 303
Target Start/End: Complemental strand, 4629 - 4524
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||| ||||||  ||||||||||||||||||| |||||| ||  ||  |||||||| | ||||||||||  ||||||  |||||| |||  ||||    
T  4629 ctccaaaagtaattctgattgaagctacaattcctagcttttgagttaactacaatcaattatgcattaaattttctattttggttattataactcatta 4530  T
Q  298 ttttcc 303  Q
    ||||||    
T  4529 ttttcc 4524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 198 - 303
Target Start/End: Original strand, 3469 - 3574
Alignment:
Q  198 ctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctacattaaatttaatattttaattattacaacctatta 297  Q
    ||||||||| ||||||  ||||||||||||||||||| |||||| ||  ||  |||||||| | ||||||||||  ||||||  |||||| |||  ||||    
T  3469 ctccaaaagtaattctgattgaagctacaattcctagcttttgagttaactacaatcaattatgcattaaattttctattttggttattataactcatta 3568  T
Q  298 ttttcc 303  Q
    ||||||    
T  3569 ttttcc 3574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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