View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_high_1 (Length: 685)
Name: NF12568_high_1
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 578; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 669
Target Start/End: Complemental strand, 2484359 - 2483706
Alignment:
| Q |
1 |
tcaaatagagggaagtgaagtgcaatcataaaggggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484359 |
tcaaatagagggaagtgaagtgcaatcataaaggggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaa |
2484260 |
T |
|
| Q |
101 |
cataccaaaccaaatgaaccaaaccgaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatca |
200 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484259 |
cataccaaacc--------------gaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatca |
2484174 |
T |
|
| Q |
201 |
ataatatcaatatcaattcattttgcattcgaactaaatatacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
2484173 |
ataatatcaatatcaattcattttgcattcgaactaaatatacaatttatcaccaaattgcatcacaaccacaccaaacaagcctttctgagtggatcgt |
2484074 |
T |
|
| Q |
301 |
aatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactcttt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484073 |
aatattttttcttattaccaaaccgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactcttt |
2483974 |
T |
|
| Q |
401 |
ttatttaaaacgacaactttctcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgcaaacacaagatatgccacttgctgcaca |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
2483973 |
ttatttaaaacgacaactttctcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgc-aattcaagatatgccacttgctgcaca |
2483875 |
T |
|
| Q |
501 |
tgaagaaactcaataatcaatttgtaatgcctctgaatatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatata |
600 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483874 |
tgaagaaactcaataatcaagttgtaatgcctctgaagatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatata |
2483775 |
T |
|
| Q |
601 |
acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacggcagaagcgattagtg |
669 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483774 |
acgaatattcaaaagacaaaccaaaaacaatcccaaacttttggaattcgacggcagaagcgattagtg |
2483706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 558 - 669
Target Start/End: Complemental strand, 2479359 - 2479244
Alignment:
| Q |
558 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
653 |
Q |
| |
|
|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
|
| Q |
654 |
gcagaagcgattagtg |
669 |
Q |
| |
|
| ||| ||||||||| |
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|
| T |
2479259 |
gtggaaacgattagtg |
2479244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 240 - 450
Target Start/End: Original strand, 17927413 - 17927621
Alignment:
| Q |
240 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatatttt-ttcttattaccaaaccgcctctcaattaat |
338 |
Q |
| |
|
||||||||||||| ||||| ||| |||||| ||||||| |||| | |||||||||| | |||||| ||||||||||| | | |||||| ||||||| |
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| T |
17927413 |
atacaatttatcataaaatttcataacaaccgcaccaaataaacaaaattgagtggatctccctatttttttcttattaccgatctgcctcttaattaat |
17927512 |
T |
|
| Q |
339 |
ccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgca |
438 |
Q |
| |
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|||||||||||||| ||| | ||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||||| ||||||||||| ||||||||| |
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| T |
17927513 |
ccaataacttcaaacacaactatggtagcaaattccaaattgtatactcgatccaactcctttttttt--aacgacaattttctcaatcc-aatgttgca |
17927609 |
T |
|
| Q |
439 |
agcggtgcctat |
450 |
Q |
| |
|
|| |||| |||| |
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|
| T |
17927610 |
agtggtgtctat |
17927621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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