View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_high_2 (Length: 675)
Name: NF12568_high_2
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 45388347 - 45388598
Alignment:
| Q |
1 |
agtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatagattcagggattat |
100 |
Q |
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| T |
45388347 |
agtacaagtaatgttttttgatatatgataaaggtgaatgatgtcataacacccgaacaacagcgagttggagttaccacccgatagattcagggattat |
45388446 |
T |
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| Q |
101 |
gaaccgagaaagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtcagtccaatatatt |
200 |
Q |
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| T |
45388447 |
gaaccgagagagatatgacgtttttaaggggcacaagaacaattaaaatggccaatataacaattttctgcgtatgataacatggtcagtccaatatatt |
45388546 |
T |
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| Q |
201 |
ttaacagtatgagatatctttagactacatatgaagtatttagtttataaaat |
253 |
Q |
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| T |
45388547 |
ttaacagtatgagatat-tttagactacatatgaagtatttagtttataaaat |
45388598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 324 - 500
Target Start/End: Original strand, 45389355 - 45389530
Alignment:
| Q |
324 |
gcaataacgttttatctttnnnnnnngaaaatttatgaccagaaagtataaaaagattaagcatgcgaatttattcataaagnnnnnnncagaatcattt |
423 |
Q |
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| T |
45389355 |
gcaataacgttttatctttaaaaaaagaaaatttacgaccagaaagtataaaaagattaagcatgcaaatttattcataaagaaaaaaacagaatcattt |
45389454 |
T |
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| Q |
424 |
ttattgannnnnnnnggaaatattttatccattctttttaacaatatatcttatcaaaaaagtaattgaaatcaaac |
500 |
Q |
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| T |
45389455 |
ttattgattttttt-ggaaatattttatccattctttttaacaatatatcttatcaaaaaagtaattgatatcaaac |
45389530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 45389625 - 45389688
Alignment:
| Q |
595 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggt |
658 |
Q |
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| T |
45389625 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattctatggt |
45389688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 443 - 492
Target Start/End: Complemental strand, 31890836 - 31890787
Alignment:
| Q |
443 |
atattttatccattctttttaacaatatatcttatcaaaaaagtaattga |
492 |
Q |
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| T |
31890836 |
atattttatctattctttttaataatatgtcttatcagaaaagtaattga |
31890787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 595 - 651
Target Start/End: Original strand, 15601857 - 15601913
Alignment:
| Q |
595 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaatt |
651 |
Q |
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| T |
15601857 |
caaaatagcaattcccacttcaacagaaagtatacaaatcttacaaaactgaaaatt |
15601913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 595 - 651
Target Start/End: Original strand, 15633169 - 15633225
Alignment:
| Q |
595 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaatt |
651 |
Q |
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| T |
15633169 |
caaaatagcaattcccacttcaacagaaagtataaaaatcttacaaaactgaaaatt |
15633225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 595 - 658
Target Start/End: Original strand, 10970591 - 10970654
Alignment:
| Q |
595 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaattatatggt |
658 |
Q |
| |
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||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||| |||||| |
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| T |
10970591 |
caaaatagcaattcccagttcaacagaaagtatacaagtcttacaaaactgaaaattttatggt |
10970654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 15601668 - 15601718
Alignment:
| Q |
443 |
atattttatccattcttttt-aacaatatatcttatcaaaaaagtaattga |
492 |
Q |
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| T |
15601668 |
atattttatccattcttttttaataatatatcttatcaaaaatgtaattga |
15601718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 443 - 492
Target Start/End: Original strand, 41611071 - 41611121
Alignment:
| Q |
443 |
atattttatccattctttttaacaatatatcttatc-aaaaaagtaattga |
492 |
Q |
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| T |
41611071 |
atattttatccattctttttaataatatatcttatcaaaaaaagtaattga |
41611121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 595 - 651
Target Start/End: Original strand, 41611228 - 41611284
Alignment:
| Q |
595 |
caaaatagcaattcccacttcaacagaaagtataccaatcttacaaaattgaaaatt |
651 |
Q |
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||||||||||||||||||||||||| ||| |||| |||||||||||| |||||||| |
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| T |
41611228 |
caaaatagcaattcccacttcaacataaaccatacaaatcttacaaaagtgaaaatt |
41611284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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