View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12568_high_3 (Length: 613)
Name: NF12568_high_3
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_3 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 43600024 - 43600561
Alignment:
| Q |
18 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggg-aatgcttcataatccccaagctcttcaggtcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43600024 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggggaatgcttcataatccccaagctcttcaggtcag |
43600123 |
T |
|
| Q |
117 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43600124 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
43600223 |
T |
|
| Q |
217 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600224 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
43600323 |
T |
|
| Q |
317 |
tttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600324 |
tttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
43600423 |
T |
|
| Q |
417 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43600424 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
43600523 |
T |
|
| Q |
517 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43600524 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
43600561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 43605516 - 43606053
Alignment:
| Q |
18 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggg-aatgcttcataatccccaagctcttcaggtcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
43605516 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggggaatgcttcataatccccaagctcttcaggtcag |
43605615 |
T |
|
| Q |
117 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43605616 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
43605715 |
T |
|
| Q |
217 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605716 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
43605815 |
T |
|
| Q |
317 |
tttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43605816 |
tttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
43605915 |
T |
|
| Q |
417 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43605916 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
43606015 |
T |
|
| Q |
517 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43606016 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
43606053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 18 - 554
Target Start/End: Original strand, 43611008 - 43611545
Alignment:
| Q |
18 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggg-aatgcttcataatccccaagctcttcaggtcag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43611008 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttgggggaatgcttcataatccccaagctcttcaggtcag |
43611107 |
T |
|
| Q |
117 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43611108 |
catgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagt |
43611207 |
T |
|
| Q |
217 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611208 |
tgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcag |
43611307 |
T |
|
| Q |
317 |
tttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
416 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611308 |
tttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaag |
43611407 |
T |
|
| Q |
417 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611408 |
ttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtct |
43611507 |
T |
|
| Q |
517 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43611508 |
tcttttgagtgtggatgcttttgggaagacgacggtgg |
43611545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 18 - 603
Target Start/End: Complemental strand, 55338388 - 55337810
Alignment:
| Q |
18 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattagttaaagcttgttggggaatgcttcataatccccaagctcttcaggtcagc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55338388 |
aaattgtcataaatgctggaaaattaaaaggctttcaatgatgctattaattaaagcttgttggggaatgcttcataatccccatgctcttcaggtcagc |
55338289 |
T |
|
| Q |
118 |
atgctgaaaggcattcatttaatgaatgttcgtaggcatactattaggaatgtgtatgttaggtgcaggctcaatagaaatggccaatcctaatttagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
55338288 |
atgctgaaaggcattcatttaatgaatgttcgtaggcatactgttaggaatgtgtacgttaggtgcaggctcgatagaaatggccaatcctaatttagtt |
55338189 |
T |
|
| Q |
218 |
gtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagtaactggttggttggaaaagactaggctccttgtttcctagcagt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55338188 |
gtatgttttaaatagagtaagggagagcaggtggcattcggttattttg-------aactggttggttggaaaagactaggctccttgtttcctagcagt |
55338096 |
T |
|
| Q |
318 |
ttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccaaagt |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
55338095 |
ttgtggaagttcacagcaattccctttcctccttcaatttcatttgtattttctgttttcaatgcataaccaactcaaaaggaaggattattcccagagt |
55337996 |
T |
|
| Q |
418 |
tttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtctt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55337995 |
tttattaataaataagtcctgttcagtattagtacgaatcttacaaggttctatcaactggtatcagaagtacacgatcctggcagcagcttgatgtctt |
55337896 |
T |
|
| Q |
518 |
cttttgagtgtggatgcttttgggaagacgacggtggatgaacatgaacgattaatctgagtgtattttttcttttcttctctgtg |
603 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
55337895 |
cttttgagtgtggatgctttggggaagacgacggtggatgaacatgaacgattaatctgagtgtatttttccttttcttctctgtg |
55337810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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