View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_high_4 (Length: 511)
Name: NF12568_high_4
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_4 |
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| [»] chr8 (12 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 430; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 511
Target Start/End: Original strand, 3033523 - 3034015
Alignment:
| Q |
19 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgtt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3033523 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgtt |
3033620 |
T |
|
| Q |
119 |
gtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaagg |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033621 |
gtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaagg |
3033720 |
T |
|
| Q |
219 |
tccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat--nnnnnn |
316 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033721 |
tccaagtctacaaaaatattattcaaacgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactataaaaaaaa |
3033820 |
T |
|
| Q |
317 |
nnnctatatggatcgaattgattacaaaatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttg |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3033821 |
aaactatatggatcgaattgattacaaaatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttg |
3033920 |
T |
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| Q |
417 |
tagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
511 |
Q |
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| T |
3033921 |
tagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
3034015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 25125753 - 25125464
Alignment:
| Q |
19 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgtt |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25125753 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgtt |
25125656 |
T |
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| Q |
119 |
gtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaagg |
218 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
25125655 |
gtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcataaaacttgatcaagg |
25125556 |
T |
|
| Q |
219 |
tccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |||||||| |
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| T |
25125555 |
tccaagtctacaaaaagattattcaaatgatagaaagactaatgaataagtgcttgaaaatttatggaaacaaacaatagctacaatactat |
25125464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 3041154 - 3041447
Alignment:
| Q |
19 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
3041154 |
tatttactaccaaaatcatatggaccaaattgattcagaaggcttcctctctaatttcctttctcctctaat--cactgattcttcaatttatctttgtt |
3041251 |
T |
|
| Q |
119 |
gtgtagctcagtgaggttatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaagaaaactataatgtggcataaaacttgatcaa-- |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||| | |
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| T |
3041252 |
gtgtagctcagtgaggtgatgtggcaaaaaatttagggttttaacctaaaagaagtcgtgttggaaaaaaactatactgtggcatcaaacttgatccagg |
3041351 |
T |
|
| Q |
217 |
--ggtccaagtctacaaaaatattattcaaatgatagaaagactaatgaataagtgctggaatttttatggaaacagacaatagctataatactat |
310 |
Q |
| |
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|||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| |
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| T |
3041352 |
ttggtccaagtctacaaaaagattattcaaatgatagcaagactaatgaataagtgctggaaaatttatggaaacaaacaatagctacaatactat |
3041447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 320 - 511
Target Start/End: Original strand, 3041863 - 3042055
Alignment:
| Q |
320 |
ctatatggatcgaattgattacaaaatctaaacatggcttcctctctactcctttccttt-ctcctatactcgctgattcttcaatccgtcggtgttgta |
418 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
3041863 |
ctatatggatgaaattgattacaaaatctaaacatcgcttcctctctactcctttccttttctcctatactcgctgattcttcaatccatcggtgttgta |
3041962 |
T |
|
| Q |
419 |
gctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041963 |
gctcaaaccaatagtactatagccattggtgattcttttactgctgacaccagcaactctacatggttactttcaccttctggtgactttgcc |
3042055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 344 - 511
Target Start/End: Original strand, 3054710 - 3054877
Alignment:
| Q |
344 |
aatctaaacatggcttcctctctactcctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagcca |
443 |
Q |
| |
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|||||||||||||||||| ||||||| ||| ||||||| || | || ||||||||||||||| || |||| ||||||||||||| | |||||||||| |
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| T |
3054710 |
aatctaaacatggcttccactctactgcttccctttcttctcttgtcactgattcttcaatccatccatgttctagctcaaaccaaaaacactatagcca |
3054809 |
T |
|
| Q |
444 |
ttggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
511 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
3054810 |
ttggtgattcttttactgctgaaacaagcaactctacatggttgctttccccttctggtgactttgcc |
3054877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 371 - 511
Target Start/End: Complemental strand, 3064563 - 3064423
Alignment:
| Q |
371 |
ctttcctttctcctatactcgctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaacca |
470 |
Q |
| |
|
||||||||| |||| | ||| |||||||| |||||| || ||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |||||| |
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| T |
3064563 |
ctttcctttgtcctctgctcactgattctgcaatccatctgtgttgtagctcaaaccaaaagtaccatagtcattggtgattcttttactgcacaaacca |
3064464 |
T |
|
| Q |
471 |
gcaactctacatggttactttcaccttctggtgactttgcc |
511 |
Q |
| |
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| | |||| ||||||| |||||||||||||||||||||||| |
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| T |
3064463 |
gtacctctccatggttgctttcaccttctggtgactttgcc |
3064423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 416 - 508
Target Start/End: Complemental strand, 3066555 - 3066463
Alignment:
| Q |
416 |
gtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgacttt |
508 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||| ||||||| |||||||||||||||||||| |
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| T |
3066555 |
gtagctcaaaccaaaagtactatagccattggtgattcttttactgcacaaaccaacacctcttcatggttgttttcaccttctggtgacttt |
3066463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 392 - 511
Target Start/End: Complemental strand, 3072237 - 3072118
Alignment:
| Q |
392 |
ctgattcttcaatccgtcggtgttgtagctcaaaccaatagtactatagccattggtgattcttttactgctgaaaccagcaactctacatggttacttt |
491 |
Q |
| |
|
||||||||||||||| || ||||||||||||||||||| ||||| ||||| |||||||| | || | | ||||||| || |||| ||||||| |||| |
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| T |
3072237 |
ctgattcttcaatccatcagtgttgtagctcaaaccaaaagtaccatagcagctggtgattttcatatttcagaaaccaacacctctccatggttgcttt |
3072138 |
T |
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| Q |
492 |
caccttctggtgactttgcc |
511 |
Q |
| |
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|||||||||||||||||||| |
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| T |
3072137 |
caccttctggtgactttgcc |
3072118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 3047117 - 3047179
Alignment:
| Q |
57 |
aaggcttcctctttactttcctttctcctctaatatcactgattcttcaatttatctttgttgtg |
121 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3047117 |
aaggcttcctctctactttcctttctcctctaat--cactgattcttcaatttatctttgttgtg |
3047179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 442 - 511
Target Start/End: Complemental strand, 3068516 - 3068447
Alignment:
| Q |
442 |
cattggtgattcttttactgctgaaaccagcaactctacatggttactttcaccttctggtgactttgcc |
511 |
Q |
| |
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||||||||||||||||||||| || ||| |||||||| ||||||| |||||||||||||||||||||||| |
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| T |
3068516 |
cattggtgattcttttactgcagataccggcaactctccatggttgctttcaccttctggtgactttgcc |
3068447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 3039505 - 3039544
Alignment:
| Q |
19 |
tatttactaccaaaatcatatggaccaaattgattcagaa |
58 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||||||||| |
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| T |
3039505 |
tatttactatcaaaattatatggaccaaattgattcagaa |
3039544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 3053818 - 3053856
Alignment:
| Q |
19 |
tatttactaccaaaatcatatggaccaaattgattcaga |
57 |
Q |
| |
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||||||||| |||||| |||||||||||||||||||||| |
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| T |
3053818 |
tatttactatcaaaattatatggaccaaattgattcaga |
3053856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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