View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12568_high_5 (Length: 408)
Name: NF12568_high_5
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 178 - 392
Target Start/End: Original strand, 47262927 - 47263141
Alignment:
| Q |
178 |
ttctactaaacttcacttactctaaagctagaaataatttgtattttttactcgtttaggaaccatgatgacaatgtctcatgtaagaggataatggtta |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47262927 |
ttctactaaacttcacttactctaaagctagaattaatttgcattttttactcgtttaggaaccatgatgacaatgtctcatgtaagaggataatggtta |
47263026 |
T |
|
| Q |
278 |
tttattcaattttgaatattaaacaaattgatattgtaaatcaatatttaaaatgattattttcaaaaaagcactaatttatagatgctttctttgccca |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47263027 |
tttattcaattttgaatattaaacaaattgatattgtaaatcaatatttaaaatgattattttcaaaaaagcactaatttatagatgctttctttgccca |
47263126 |
T |
|
| Q |
378 |
catatgctagagaat |
392 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47263127 |
catatgctagagaat |
47263141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 47262660 - 47262836
Alignment:
| Q |
1 |
catccatagaggtagatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcataaattcacaaatcatagataatccaacttgaaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47262660 |
catccatagaggtagatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcataaattcacaaatcatagataatccaacttgaaga |
47262759 |
T |
|
| Q |
101 |
taagagtat--nnnnnnnnnnngttacggaagtaagagaaaacaaattaaaagtggagattcatttagattcggttttatt |
179 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47262760 |
taagagtataaaaaaaaaaaaagttacggaagtaagagaaaaca----aaaagtggagattcatttagattcggttttatt |
47262836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 9296692 - 9296758
Alignment:
| Q |
25 |
aaaatggatataaacataaatctaaatgaacagaacctgcat-aaattcacaaatcatagataatcc |
90 |
Q |
| |
|
||||||||||| ||||||||| ||||| |||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
9296692 |
aaaatggatatgaacataaatttaaataaacagaacctgcatcaaattcccaaatcatagataatcc |
9296758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 9285938 - 9286021
Alignment:
| Q |
14 |
agatttgaatgaaaatggatataaacataaatctaaatgaacagaacctgcat-aaattcacaaatcatagataatccaacttgaaga |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
9285938 |
agatttgaataaaaatggatatgaacatt----taaatgaacagaacctgcataaaattcccaactcatagatattccagcttgaaga |
9286021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University