View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_high_6 (Length: 380)
Name: NF12568_high_6
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 15 - 362
Target Start/End: Original strand, 32243436 - 32243783
Alignment:
| Q |
15 |
cagagagcaggagacagaggatataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatg |
114 |
Q |
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| T |
32243436 |
cagagagcaagagacaaaggatataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatg |
32243535 |
T |
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| Q |
115 |
actcgatctttccacaaccaaaacggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgt |
214 |
Q |
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| T |
32243536 |
actcgatctttccacaaccaaaacggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgt |
32243635 |
T |
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| Q |
215 |
tggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaatattaatgtcgatattggtagtgataaacct |
314 |
Q |
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| T |
32243636 |
tggaaatcatgatggcgaggtgcatgacacattggaaattatggcatctggagaagttttcaatggtaatattaatgtcgatattggtagtgctaaacct |
32243735 |
T |
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| Q |
315 |
aaaggtttgattgaagaagctacattatctcggtatgtccaaggagga |
362 |
Q |
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| T |
32243736 |
aaaggtttgattgaagaagctacattatcccggtatgtccaaggagga |
32243783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 37 - 272
Target Start/End: Original strand, 32248539 - 32248774
Alignment:
| Q |
37 |
ataccgttcatcttgtgattggcatggcagggcaagacaagcaatccatctggaaaacaagaccgggtcatcccaatgactcgatctttccacaaccaaa |
136 |
Q |
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| T |
32248539 |
ataccattcatcttgtgatcggcatggcagggcaagactggcaacccatgtggcgaccaagaccggatcatcccgatgtcccaatctatccacaaccaaa |
32248638 |
T |
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| Q |
137 |
acggtctttgtatcgtgggggtgaatttgggtacattagactagtggctacaaagcagaagctcgtggtttcttatgttggaaatcatgatggcgaggtg |
236 |
Q |
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| T |
32248639 |
acgatctttgtaccgcgggggtgagttcggatacattagattgatggctacaaagcagaatctcgtgatttcttatgttggtaatcatgatggcgaggtg |
32248738 |
T |
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| Q |
237 |
catgacacattggaaattatggcatctggagaagtt |
272 |
Q |
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| T |
32248739 |
catgacacattggagattctggaatctggagaagtt |
32248774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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