View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_low_10 (Length: 332)
Name: NF12568_low_10
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29720099 - 29720330
Alignment:
| Q |
1 |
aagtgtagtcctgtgacacaaaactattcaaccacaatgccatttatgcaggtactacacaatagtaacttatatttctttgtttgagtctaaattattt |
100 |
Q |
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| T |
29720099 |
aagtgtagtcctgtgacacaaaactattcaaccaccatgccaattatgcaggtactacacaatagtaacttatatttctttgtttgagtctaaattattt |
29720198 |
T |
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| Q |
101 |
tgttcaatattttatctattaaatgtgtttttgattgttgtatgtgcagaattttccattttcacatatatatcaagatctagtagcagctagtattagt |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
29720199 |
tgttcaatattttatctattaaatatgtttttgattgttgtatgtgcagaattttccattttcacataaatataaagatctagtagcagctagtattagt |
29720298 |
T |
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| Q |
201 |
acatcacaagttagattatattcatcacacgg |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
29720299 |
acatcacaagttagattatattcatcacacgg |
29720330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 175 - 232
Target Start/End: Original strand, 29683523 - 29683580
Alignment:
| Q |
175 |
aagatctagtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29683523 |
aagatctagtagcagctagtattagtacatcacaagttagattatattcatcacacgg |
29683580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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