View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_low_11 (Length: 320)
Name: NF12568_low_11
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 13378564 - 13378272
Alignment:
| Q |
14 |
cagagaagcctttggagtttccagtattttctttgattgtgggtaagcatatgatnnnnnnnttctatacagactatgttatattaaaatatgaaggttg |
113 |
Q |
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| T |
13378564 |
cagagaagcctttggagtttccagtattttctttgattgtgggtaagcatatgataaaaaaattctatacagactatgttatattaaaatatgaaggttg |
13378465 |
T |
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| Q |
114 |
ttaaatataatacatcacattattttttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgca |
213 |
Q |
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| T |
13378464 |
ttatatataatacatcacattattttttgtagggagaaagacaattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgca |
13378365 |
T |
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| Q |
214 |
gccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatat |
306 |
Q |
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| T |
13378364 |
gccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatat |
13378272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 144 - 306
Target Start/End: Complemental strand, 13372696 - 13372534
Alignment:
| Q |
144 |
agggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgag |
243 |
Q |
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| T |
13372696 |
agggagaaagataattggtgggagtatgattggagggataaaggagacacaagaaatgattgattttgcagccaaacatgatgtgaaacctgatattgag |
13372597 |
T |
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| Q |
244 |
gttgttccagtggattatgtaaatactgcaatggaacgcttagtcaaagctgatgtgaaatat |
306 |
Q |
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| T |
13372596 |
gttattccaatagattatgtgaatagtgcaatggatcgtctactcaaagctgatgtgaaatat |
13372534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 13425754 - 13425646
Alignment:
| Q |
170 |
tgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgtaaatac |
269 |
Q |
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| T |
13425754 |
tgattggagggataaaggagactcaagaaatgattgattttgcggccgaacacaatgtaacacctgatattgaggttgttcctattgattatgtcaacac |
13425655 |
T |
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| Q |
270 |
tgcaatgga |
278 |
Q |
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| T |
13425654 |
agcaatgga |
13425646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 278
Target Start/End: Complemental strand, 13446491 - 13446352
Alignment:
| Q |
139 |
tttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata |
238 |
Q |
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||||||||||||||| | || | ||| ||| | ||||||||||| || || || |||||||||||||||||||| || ||||| |||| ||||| | |
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| T |
13446491 |
tttgtagggagaaagtcaatagctggaagtttaattggagggataaaagagactcaagaaatgattgattttgctgctaaacacaatgtaacgcctgaga |
13446392 |
T |
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| Q |
239 |
ttgaggttgttccagtggattatgtaaatactgcaatgga |
278 |
Q |
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| T |
13446391 |
ttgaggttgttcctattgattatgtcaacaccgcaatgga |
13446352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 13389870 - 13389961
Alignment:
| Q |
172 |
attggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgatattgaggttgttccagtggattatgt |
263 |
Q |
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| T |
13389870 |
attggaggcatcaaggagactcaagagatgcttgactttgctgctaaacacagcgtaaaacctgacattgaagtcgttcctgtggattatgt |
13389961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 13453277 - 13453235
Alignment:
| Q |
170 |
tgattggagggatgaaggaaacacaagaaatgattgattttgc |
212 |
Q |
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| T |
13453277 |
tgattggagggatcaaggagactcaagaaatgattgattttgc |
13453235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 13394330 - 13394379
Alignment:
| Q |
172 |
attggagggatgaaggaaacacaagaaatgattgattttgcagccaaaca |
221 |
Q |
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| T |
13394330 |
attggaggcatgaaagagacacaagaaatgattgattttgctgctaaaca |
13394379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 28431499 - 28431638
Alignment:
| Q |
139 |
tttgtagggagaaagaccattggtgggagtatgattggagggatgaaggaaacacaagaaatgattgattttgcagccaaacatggcgtaaaacctgata |
238 |
Q |
| |
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|||||||||||||||| || || ||||| |||| ||||| || ||||| |||||||||||||| |||||||| || ||||||| ||| |||||||| | |
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| T |
28431499 |
tttgtagggagaaagataataggagggagcctgatcggaggaattaaggagacacaagaaatgatagattttgctgctaaacatgacgtgaaacctgaaa |
28431598 |
T |
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| Q |
239 |
ttgaggttgttccagtggattatgtaaatactgcaatgga |
278 |
Q |
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|||| |||||| ||| |||||||| || |||||| |||| |
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| T |
28431599 |
ttgaagttgtttcagctgattatgtgaacactgcattgga |
28431638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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