View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_low_12 (Length: 315)
Name: NF12568_low_12
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 9804978 - 9804674
Alignment:
| Q |
1 |
tcaatagaacaactcacctttacgataactccatcttgtgcagcttgaatatcgacatcaggagctctactttgaggattttctgctctagcgtttgtcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
9804978 |
tcaatagaacaactcacctttacgataactccatcttgtgcagcttgaatatcgatatcaggagctctactttgaggattttctgctctagagtttgccg |
9804879 |
T |
|
| Q |
101 |
gcggtgtcgatgatgatccatctctagaagtgattcctaattgctctctctcagattccatggtcttgagttttgcttgaagctcgttgatgtaagcaat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804878 |
gcggtgccgatgatgatccatctctagaagtgattcctaattgctctctctcagattccatggtcttgagttttgcttgaagctcgttgatgtaagcaat |
9804779 |
T |
|
| Q |
201 |
agcatctcccaacaaagatgctttgtccatcttggaaatattcggcacaacagctcgtaatgcgtaaaatcgctggtttagcttctcgcgtctttgcctc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
9804778 |
agcatctcccaacaaagatgctttgtccatcttggaaatattcggcacaacagctcgtaatgcgtaaaaacgctggtttagcttctcgcgtctttgcctc |
9804679 |
T |
|
| Q |
301 |
tctgc |
305 |
Q |
| |
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||||| |
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| T |
9804678 |
tctgc |
9804674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 305
Target Start/End: Original strand, 48835591 - 48835751
Alignment:
| Q |
145 |
tctctctcagattccatggtcttgagttttgcttgaagctcgttgatgtaagcaatagcatctcccaacaaagatgctttgtccatcttggaaatattcg |
244 |
Q |
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| T |
48835591 |
tctctctctgactccatgatcttgagttttgcttgaagctcgttgatgtaagcaatagcatcaccaagtaaagatgccttgtccatcttggaaatattcg |
48835690 |
T |
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| Q |
245 |
gcacaacagctcgtaatgcgtaaaatcgctggtttagcttctcgcgtctttgcctctctgc |
305 |
Q |
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| T |
48835691 |
gtacaacagctcttaaggcataaaaccgctgattaagcttctcgcgcctttgcctctctgc |
48835751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 223 - 308
Target Start/End: Complemental strand, 38660680 - 38660595
Alignment:
| Q |
223 |
ttgtccatcttggaaatattcggcacaacagctcgtaatgcgtaaaatcgctggtttagcttctcgcgtctttgcctctctgcttc |
308 |
Q |
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| T |
38660680 |
ttgtccattttagaaatgttaggaacaacagctcttaaggcgtaaaatctctggttaagcttctcccgtctttgcctctccgcttc |
38660595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 12886033 - 12885915
Alignment:
| Q |
190 |
atgtaagcaatagcatctcccaacaaagatgctttgtccatcttggaaatattcggcacaacagctcgtaatgcgtaaaatcgctggtttagcttctcgc |
289 |
Q |
| |
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||||||| |||||||| ||||| | || |||||||||||||| |||| ||| || ||||| ||||| | ||| || |||| ||| || |||||||| | |
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| T |
12886033 |
atgtaagatatagcatcacccaaaagtgaagctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctc |
12885934 |
T |
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| Q |
290 |
gtctttgcctctctgcttc |
308 |
Q |
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|||||||||||| ||||| |
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| T |
12885933 |
ttctttgcctctcagcttc |
12885915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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