View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12568_low_8 (Length: 359)
Name: NF12568_low_8
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 32961141 - 32960799
Alignment:
| Q |
1 |
acaaagatacaatagtgnnnnnnncaaacacatgaaaaaggaacatagctagcttttcttcctagatacaaattctaatttttcttccaaacattcactc |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32961141 |
acaaagatacaatagtgaaaaaaacaaacacatgaaaaaggaacatagctagcttttcttcctagatacaaattctaatttttcttccaaacatttactc |
32961042 |
T |
|
| Q |
101 |
cataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactccacaccttgttgttgttgatgatgatccattgaagtagatgaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32961041 |
cataaaggtctccataacatctgagtacatacctcctccttctgaattcctatactccacaccttgttgttgttgatgatgatccattgaagtagatgaa |
32960942 |
T |
|
| Q |
201 |
gatgatgaagccactcttgtaggtaaagtgaagcttctcttaaacttgtccatttttcttccaccttcatggtgactatccaagctcaaaaactcatttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32960941 |
gatgatgaagccactcttgtaggtaaagtgaagcttctcttaaacttgtccatttttcttccaccttcatggtgactatccaagctcaaaaactcatttg |
32960842 |
T |
|
| Q |
301 |
ggttcgaaccatctgaattaggattttgattaagagtgtgatg |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32960841 |
ggttcgaaccatctgaattaggattttgattaagagtgtgatg |
32960799 |
T |
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