View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12568_low_9 (Length: 348)
Name: NF12568_low_9
Description: NF12568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12568_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 4030761 - 4031086
Alignment:
| Q |
1 |
tatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaaagtatagtctataataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4030761 |
tatgaatacaattatagtggggtccaggtcaatttaaaagatattgtgaagcttgttgagacacattgcttcatattaaagaaagtatagtctataataa |
4030860 |
T |
|
| Q |
101 |
gatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtactcaagaatctttgcaagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4030861 |
gatgaaataaaacatgaaacagaaagcatcatttttcagtaagaaactcggatttttgtctgaactgaaaatccaagagtactcaagaatctttgcaagg |
4030960 |
T |
|
| Q |
201 |
aagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattagaacaaaagtttgtacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4030961 |
aagaaaacaaagattaaaaactcaaactgttgtgactttattaatgcattcattttgcatctaaaaccattttctataattagaacaaaagtttgtacaa |
4031060 |
T |
|
| Q |
301 |
gtcacaataaaactacggtatctgtc |
326 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
4031061 |
ttcacaataaaactacggtatctgtc |
4031086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University