View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12569_high_3 (Length: 329)
Name: NF12569_high_3
Description: NF12569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12569_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 3255966 - 3255647
Alignment:
| Q |
1 |
gttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255966 |
gttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgtt |
3255867 |
T |
|
| Q |
101 |
ctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3255866 |
ctttgctttgaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac |
3255767 |
T |
|
| Q |
201 |
ccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtat |
300 |
Q |
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| T |
3255766 |
ccctcaaaatgtttcgcctcaagtgtcgttttaaagaccacaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtat |
3255667 |
T |
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| Q |
301 |
tgaggaagttcatctcactc |
320 |
Q |
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|||||||||||||||||||| |
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| T |
3255666 |
tgaggaagttcatctcactc |
3255647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 7871250 - 7871340
Alignment:
| Q |
12 |
acattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttct |
102 |
Q |
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| T |
7871250 |
acattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcccactatgctattcactccctgttct |
7871340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 312
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
| Q |
110 |
gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc |
205 |
Q |
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|||||||||| || ||| |||||||| | ||| | |||||||| ||||||| |||||||| |||||||||||| |||||| || |||| || || |
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| T |
14020277 |
gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc |
14020376 |
T |
|
| Q |
206 |
aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg |
305 |
Q |
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|||| |||| ||||||| | || || || | ||| ||| ||||| ||||||||||||||||| |||||||||||||| ||||| ||||| |||| |||| |
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| T |
14020377 |
aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg |
14020476 |
T |
|
| Q |
306 |
aagttca |
312 |
Q |
| |
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|| |||| |
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| T |
14020477 |
aacttca |
14020483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 14017684 - 14017785
Alignment:
| Q |
1 |
gttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgtt |
100 |
Q |
| |
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|||||||| ||||| |||||||||||||||||||| | ||||||||||| | |||||||||||| |||||| ||||||||| | || ||| |||||| |
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| T |
14017684 |
gttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggtggaccaaactatgctatttactccctgtt |
14017783 |
T |
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| Q |
101 |
ct |
102 |
Q |
| |
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|| |
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|
| T |
14017784 |
ct |
14017785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 147 - 319
Target Start/End: Original strand, 14271406 - 14271579
Alignment:
| Q |
147 |
gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca |
246 |
Q |
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||||||| | |||||| ||| |||| ||||||||| ||||||||| || ||||| |||||| |||| ||||||| | || |||| | || ||| || |
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| T |
14271406 |
gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca |
14271505 |
T |
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| Q |
247 |
aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcact |
319 |
Q |
| |
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||| |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| |||||| |
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| T |
14271506 |
aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttcacctcact |
14271579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 183 - 317
Target Start/End: Original strand, 14017848 - 14017982
Alignment:
| Q |
183 |
ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc |
282 |
Q |
| |
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|||||| ||| ||||||||| |||||| ||| ||||||| |||| |||| || ||||| ||||| || |||||||| ||| | ||||||||||||| |
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| T |
14017848 |
ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc |
14017947 |
T |
|
| Q |
283 |
ctcaaaacagcgtagtattgaggaagttcatctca |
317 |
Q |
| |
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| T |
14017948 |
cacaaaacgacattgtattgaggaatttcatctca |
14017982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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