View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12569_low_1 (Length: 533)
Name: NF12569_low_1
Description: NF12569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12569_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Complemental strand, 47501702 - 47501197
Alignment:
| Q |
11 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
110 |
Q |
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| T |
47501702 |
agcagagaggtgaataacatatcccccagcaaaatcaataaccccacgtttagccaaccaaccatcaggacaccaaatactaaaggcaacaacagtgtac |
47501603 |
T |
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| Q |
111 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
210 |
Q |
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| T |
47501602 |
gagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagctatcaaaatcaaagtaagaccagcgaaaa |
47501503 |
T |
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| Q |
211 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
310 |
Q |
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| T |
47501502 |
caccttgataaaataccattgtagcattaggaaaattccccaaaaatgctttccccaacaaaaacttttcatctaatgctacatttggtttccctaagaa |
47501403 |
T |
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| Q |
311 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
410 |
Q |
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| T |
47501402 |
aaataccattttctccccaaatgacatttggtatgcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttata |
47501303 |
T |
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| Q |
411 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtccc |
510 |
Q |
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| T |
47501302 |
gcccatgttttcttcactaggcttccgtaaagtatgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaattgccatgcgttgtccc |
47501203 |
T |
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| Q |
511 |
ctttgt |
516 |
Q |
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|||||| |
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| T |
47501202 |
ctttgt |
47501197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 244
Target Start/End: Original strand, 13349950 - 13350111
Alignment:
| Q |
83 |
ccaaatactaaaggcaacaacagtgtacgagaatgtaacccaaagtggcacaaacaacatccatgcacgaatgttcattctcccaagtaaagcaccagct |
182 |
Q |
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|||||||||||| ||| || |||||| ||||| || | ||| | |||||||||| |||||| ||| | |||||||||||| | | |||||||||| |
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| T |
13349950 |
ccaaatactaaaagcagtaaaagtgtaagagaaagtgagccataaaggcacaaacatcatccaagcatagaagttcattctccccaacacagcaccagct |
13350049 |
T |
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| Q |
183 |
atcaaaatcaaagtaagaccagcgaaaacaccttgataaaataccattgtagcattaggaaa |
244 |
Q |
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| T |
13350050 |
atcaaaatcaaagtaatagcagcaaaaacacattgaaaataaatcatagtagcatttggaaa |
13350111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 345 - 508
Target Start/End: Complemental strand, 31605872 - 31605709
Alignment:
| Q |
345 |
gcccatgaaacccaacaaaggagaacggatgcaaatgcatagaaggccatgaaagctgagtttatagcccatgttttcttcactaggcttccgtaaagta |
444 |
Q |
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|||||| |||||||||||| || || | ||||||||||| | |||||||||||| || |||| |||||| ||||||| || | ||| || || |||| |
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| T |
31605872 |
gcccataaaacccaacaaactagtacagcagcaaatgcatatagggccatgaaagccgaatttacggcccattttttcttaaccatgctgccatagagta |
31605773 |
T |
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| Q |
445 |
tgacaagcccgggaatgctttgaagcccaaccattgttgctgctgttaactgccatgcgttgtc |
508 |
Q |
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| T |
31605772 |
ttacaagcccaggaacagtttgaaggcctactaatgttgctgctgttagttgccatgcattgtc |
31605709 |
T |
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