View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12569_low_3 (Length: 372)

Name: NF12569_low_3
Description: NF12569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12569_low_3
NF12569_low_3
[»] chr2 (2 HSPs)
chr2 (36-372)||(23379264-23379600)
chr2 (174-306)||(44885752-44885884)
[»] chr4 (1 HSPs)
chr4 (16-97)||(16582731-16582812)
[»] chr3 (9 HSPs)
chr3 (12-371)||(16739819-16740178)
chr3 (178-306)||(49642078-49642206)
chr3 (254-317)||(31661604-31661667)
chr3 (254-317)||(31808608-31808671)
chr3 (254-317)||(31934686-31934749)
chr3 (254-317)||(31972944-31973007)
chr3 (254-317)||(38015693-38015756)
chr3 (47-84)||(8565693-8565730)
chr3 (197-306)||(19771126-19771235)
[»] chr7 (6 HSPs)
chr7 (200-366)||(13015539-13015705)
chr7 (174-306)||(17239223-17239355)
chr7 (254-317)||(41600880-41600943)
chr7 (239-333)||(15630678-15630772)
chr7 (12-96)||(13015352-13015436)
chr7 (12-86)||(15632907-15632981)
[»] chr5 (3 HSPs)
chr5 (255-317)||(16084517-16084579)
chr5 (200-366)||(2158354-2158520)
chr5 (12-96)||(2158166-2158250)
[»] chr1 (4 HSPs)
chr1 (174-306)||(24082833-24082965)
chr1 (175-303)||(40490565-40490693)
chr1 (254-317)||(21703397-21703460)
chr1 (12-75)||(41116877-41116940)
[»] scaffold0252 (1 HSPs)
scaffold0252 (264-317)||(7365-7418)
[»] chr8 (4 HSPs)
chr8 (254-297)||(27978209-27978252)
chr8 (254-297)||(28035478-28035521)
chr8 (47-84)||(35284713-35284750)
chr8 (257-317)||(35284480-35284540)
[»] scaffold0011 (1 HSPs)
scaffold0011 (174-306)||(191555-191687)
[»] chr6 (2 HSPs)
chr6 (254-317)||(9958673-9958736)
chr6 (174-306)||(30588447-30588579)
[»] scaffold0414 (1 HSPs)
scaffold0414 (264-313)||(9879-9928)


Alignment Details
Target: chr2 (Bit Score: 109; Significance: 9e-55; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 36 - 372
Target Start/End: Complemental strand, 23379600 - 23379264
Alignment:
Q  36 ggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggctgacacgctcggacatttaggggaaccgaagtggaagg 135  Q
    ||||||||||||| ||||| || | |||||| || ||||||||||||||||||| ||||||||  |||  || ||||||  | | ||||||||||| |||    
T  23379600 ggttgagggaggaggagaaagcagcgtcaatgttacatttatatctacccggcagaggaggctaccactttcagacattgggtgaaaccgaagtggtagg 23379501  T
Q  136 tcccccctccattgataattacggttggtgttgactatttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcag 235  Q
    ||||||||| | ||| | |  ||| |||| ||||||| |||||||| | || |||||||||||||||||||||||||||| ||||||||||| |||||      
T  23379500 tcccccctcaagtgacagtgtcggctggttttgactagttgatgcaggcacttcgggagtgttagctagctgccaatcaagaaccatattccgggctcgt 23379401  T
Q  236 tccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaagag 335  Q
    || ||    ||||||||||||||||||||||||||||| |||  ||| |||| |||||||||||||||||| || ||||||||    | |||| ||||      
T  23379400 tcaactgttgtagcgctggtttctgtgacatcttcccatacttgaaggttgcagtgtttccaaatgctccaaattacagttgttaaacattgtgaaagtt 23379301  T
Q  336 cagccgacaagttttcaagtatagaaaaaatggcagc 372  Q
    || ||||||| |||||||| | |||||||||||||||    
T  23379300 caaccgacaaattttcaagcaaagaaaaaatggcagc 23379264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 44885884 - 44885752
Alignment:
Q  174 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttccca 273  Q
    |||||||||||||| | ||||| ||||| | |||||| ||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  44885884 ttgatgcaagaaccgcaggagtattagccaactgccagtcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 44885785  T
Q  274 aactctaagattgcggtgtttccaaatgctcca 306  Q
    |||||| || || ||||||||||||||||||||    
T  44885784 aactctgaggttccggtgtttccaaatgctcca 44885752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 16 - 97
Target Start/End: Original strand, 16582731 - 16582812
Alignment:
Q  16 acaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggc 97  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  16582731 acaaatttcaataccagttcgattgagggaggatgagaacgcggcgtcaatattgcatttatatctacctggcataggaggc 16582812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 12 - 371
Target Start/End: Original strand, 16739819 - 16740178
Alignment:
Q  12 ggacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggaggctgacacgctcggac 111  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||||    ||||| ||||||||||||| |||||| | ||||||  | || |   |       
T  16739819 ggacacaaatatcaataccagtgtggttgagggaggaagagaacgcaacatcaatgttgcatttatatcgacccggaagaggaggtcgccaagaatgtgt 16739918  T
Q  112 atttaggggaaccgaagtggaaggtcccccctccattgataattacggttggtgttgactatttgatgcaagaacctcgggagtgttagctagctgccaa 211  Q
    | || ||||  |||||||||| ||||||||||| |  | || |  || |||||||||||| || ||||| ||  || | |||   || |||| |||||||    
T  16739919 aatttggggccccgaagtggacggtcccccctcaaagggtattggcgattggtgttgactgttagatgctagggccgctggatcattggctaactgccaa 16740018  T
Q  212 tcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatga 311  Q
    |||| ||||||  | | ||||| ||| ||||||||||||||  ||||||  ||||| ||||| || | ||||||||||||||||||||||||||| || |    
T  16740019 tcaacaaccatgcttcgggctcggtcaaccaccgtagcgctcatttctgaaacatcgtcccagacgcgaagattgcggtgtttccaaatgctccatatta 16740118  T
Q  312 cagttgtccgtcgttgtaaaagagcagccgacaagttttcaagtatagaaaaaatggcag 371  Q
    | |||||| |||||||| ||||  ||  ||||||| ||||||| | ||||||||| ||||    
T  16740119 cggttgtcagtcgttgtgaaagttcaatcgacaaggtttcaagcaaagaaaaaattgcag 16740178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 49642206 - 49642078
Alignment:
Q  178 tgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaaact 277  Q
    |||||||||| |  |||| ||||| || ||||||||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||||||    
T  49642206 tgcaagaaccgcaagagtattagccagttgccaatcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatcccaaact 49642107  T
Q  278 ctaagattgcggtgtttccaaatgctcca 306  Q
    || || || ||||||||||||||||||||    
T  49642106 ctgaggttccggtgtttccaaatgctcca 49642078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 31661604 - 31661667
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31661604 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31661667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 31808671 - 31808608
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||||||| ||||| ||||||||||||||||| ||||||||||| | |||||| ||||||||||    
T  31808671 gtttctgtaacatcgtcccaaactctaagattacggtgtttccataagctccaaatgacagttg 31808608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 31934749 - 31934686
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31934749 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31934686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 31973007 - 31972944
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    ||||| ||| |||| |||||||||| |||||||||||||||||| | |||||||||||||||||    
T  31973007 gtttcagtggcatcgtcccaaactcgaagattgcggtgtttccataagctccacatgacagttg 31972944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 38015693 - 38015756
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||||| | ||||||||||||||||||||||||||||||||| |||| ||||| || |||||||    
T  38015693 gtttctattacatcttcccaaactctaagattgcggtgtttcaaaatactccatattacagttg 38015756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 8565730 - 8565693
Alignment:
Q  47 gatgagaacgcggtgtcaatattgcatttatatctacc 84  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  8565730 gatgagaacgctgcgtcaatattgcatttatatctacc 8565693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 19771126 - 19771235
Alignment:
Q  197 ttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttcc 296  Q
    ||||| || |||||||||| ||||| |||||| || || || || |||||||| || | |||  |  |||| || |||||||||||||| ||||||||||    
T  19771126 ttagccagttgccaatcaacaaccaaattcctagcacattcaacaaccgtagcactagcttccatagcatcatctcaaactctaagattacggtgtttcc 19771225  T
Q  297 aaatgctcca 306  Q
    ||| ||||||    
T  19771226 aaaggctcca 19771235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 366
Target Start/End: Original strand, 13015539 - 13015705
Alignment:
Q  200 gctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaa 299  Q
    |||| ||||||||||| ||||||  | | ||||| ||| |||||| ||||||| |||||||  ||||| ||||| || | ||||||| ||||||||||||    
T  13015539 gctaactgccaatcaacaaccatgcttcgggctcggtcaaccaccatagcgcttgtttctgaaacatcatcccagacgcgaagattgtggtgtttccaaa 13015638  T
Q  300 tgctccacatgacagttgtccgtcgttgtaaaagagcagccgacaagttttcaagtatagaaaaaat 366  Q
    ||||||| || || |||||| |||||||| ||||  ||  ||||||| ||||||| | |||||||||    
T  13015639 tgctccatattacggttgtcagtcgttgtgaaagttcaatcgacaaggtttcaagcaaagaaaaaat 13015705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 17239223 - 17239355
Alignment:
Q  174 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttccca 273  Q
    |||||||||||||| |  |||| ||||| || ||||||||||  |||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  17239223 ttgatgcaagaaccgcatgagtattagccagttgccaatcaacgaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 17239322  T
Q  274 aactctaagattgcggtgtttccaaatgctcca 306  Q
    |||||| || || ||||||||||||||||||||    
T  17239323 aactctgaggttccggtgtttccaaatgctcca 17239355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 41600943 - 41600880
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||| | |||||||||||||||||    
T  41600943 gtttttgtaacatcgtcccaaactctaagattgcagtgtttccataagctccacatgacagttg 41600880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 239 - 333
Target Start/End: Complemental strand, 15630772 - 15630678
Alignment:
Q  239 accaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttgtccgtcgttgtaaaag 333  Q
    |||||||||||||| |||||||  ||||| ||||| |  | ||||| ||||||||||||||||||||| || || |||||| |||||||| ||||    
T  15630772 accaccgtagcgctcgtttctgaaacatcgtcccagatgcgaagatcgcggtgtttccaaatgctccatattacggttgtcagtcgttgtgaaag 15630678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 13015352 - 13015436
Alignment:
Q  12 ggacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggagg 96  Q
    ||||||||||  |||||||||| |||||||||||||| ||||||||    ||||| ||||||||||||| |||||| | ||||||    
T  13015352 ggacacaaataccaataccagtgcggttgagggaggaagagaacgcaacatcaatgttgcatttatatcgacccggaagaggagg 13015436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 15632981 - 15632907
Alignment:
Q  12 ggacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccg 86  Q
    ||||||||||  ||||||||||  ||||||||||||| |||||||| |  ||||| ||||||||||||| |||||    
T  15632981 ggacacaaataccaataccagtgtggttgagggaggaagagaacgcagcatcaatgttgcatttatatcgacccg 15632907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 317
Target Start/End: Complemental strand, 16084579 - 16084517
Alignment:
Q  255 tttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    ||||||| ||||| ||||||||||||||||||||||||||||| | |||||||||||||||||    
T  16084579 tttctgtaacatcgtcccaaactctaagattgcggtgtttccataagctccacatgacagttg 16084517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 200 - 366
Target Start/End: Original strand, 2158354 - 2158520
Alignment:
Q  200 gctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaaactctaagattgcggtgtttccaaa 299  Q
    |||| ||||||||||| ||||||  | | ||| | ||| |||||||||||||| |||| ||  ||||  ||||| || | |||||| |||||||||||||    
T  2158354 gctaactgccaatcaacaaccatgcttcgggcccggtcaaccaccgtagcgctcgtttttgaaacattgtcccagacgcgaagattccggtgtttccaaa 2158453  T
Q  300 tgctccacatgacagttgtccgtcgttgtaaaagagcagccgacaagttttcaagtatagaaaaaat 366  Q
    ||||||| || || |||||| |||||||| ||||  ||  ||||||| ||||||| | |||||||||    
T  2158454 tgctccatattacggttgtcagtcgttgtgaaagttcaatcgacaaggtttcaagcaaagaaaaaat 2158520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 2158166 - 2158250
Alignment:
Q  12 ggacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcatttatatctacccggcataggagg 96  Q
    ||||||||||  |||||||||| |||||||||||||| |||||| |    ||||| || |||||||||| |||||| | ||||||    
T  2158166 ggacacaaataccaataccagtgcggttgagggaggaagagaacacaacatcaatgttacatttatatcaacccggaagaggagg 2158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 24082965 - 24082833
Alignment:
Q  174 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttccca 273  Q
    ||||||||||||||   ||||| ||||| || |||||||||| ||||||||| || || |  ||||| ||||| || ||||||||||||||||  |||||    
T  24082965 ttgatgcaagaaccgtaggagtattagccagttgccaatcaacaaccatatttctagcacgctccactaccgttgcactggtttctgtgacattatccca 24082866  T
Q  274 aactctaagattgcggtgtttccaaatgctcca 306  Q
    |||||| || ||  |||||||||||| ||||||    
T  24082865 aactctgaggttctggtgtttccaaaggctcca 24082833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 175 - 303
Target Start/End: Original strand, 40490565 - 40490693
Alignment:
Q  175 tgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttcccaa 274  Q
    |||||||||| |  ||||||||||||| |  || |||||||  ||||| ||||| || || ||||| |||  ||| ||||||||  | ||||| ||||||    
T  40490565 tgatgcaagagcgacgggagtgttagccaaatgtcaatcaacgaccattttcctagcacactccacaacctaagcactggtttccataacatcatcccaa 40490664  T
Q  275 actctaagattgcggtgtttccaaatgct 303  Q
    |||||||| || |||||||||||||||||    
T  40490665 actctaaggttacggtgtttccaaatgct 40490693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 317
Target Start/End: Original strand, 21703397 - 21703460
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||||||| ||||| || ||||||||||||||||||||||||||    ||||||||||||||||    
T  21703397 gtttctgtaacatcgtcacaaactctaagattgcggtgtttccatcaactccacatgacagttg 21703460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 41116940 - 41116877
Alignment:
Q  12 ggacacaaatttcaataccagttcggttgagggaggatgagaacgcggtgtcaatattgcattt 75  Q
    ||||||||||  |||||||||| |||||||||||||| ||||||||||  ||||| ||||||||    
T  41116940 ggacacaaataccaataccagtgcggttgagggaggaagagaacgcggcatcaatgttgcattt 41116877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 317
Target Start/End: Complemental strand, 7418 - 7365
Alignment:
Q  264 catcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||| |||||||||||||||||| |||||||||| | |||||||||||||||||    
T  7418 catcgtcccaaactctaagattgtggtgtttccataagctccacatgacagttg 7365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 27978252 - 27978209
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttcca 297  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  27978252 gtttttgtaacatcttcccaaactctaagattgcggtgtttcca 27978209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 297
Target Start/End: Complemental strand, 28035521 - 28035478
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttcca 297  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  28035521 gtttttgtaacatcttcccaaactctaagattgcggtgtttcca 28035478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 35284750 - 35284713
Alignment:
Q  47 gatgagaacgcggtgtcaatattgcatttatatctacc 84  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35284750 gatgagaacgctgcgtcaatattgcatttatatctacc 35284713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 35284540 - 35284480
Alignment:
Q  257 tctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    ||||| |||||||||||||| | |||||| |||||||||||||  ||||| ||||| ||||    
T  35284540 tctgtaacatcttcccaaacacgaagattacggtgtttccaaagactccatatgaccgttg 35284480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 306
Target Start/End: Original strand, 191555 - 191687
Alignment:
Q  174 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttccca 273  Q
    |||||||||||||| | ||||| |||||||| || |||||||  |||||||| || || |  ||||| ||||| |  || |||||| ||||||  || ||    
T  191555 ttgatgcaagaaccacaggagtattagctagttgacaatcaacgaccatatttctagcacgctccactaccgttgtactagtttctatgacattatcgca 191654  T
Q  274 aactctaagattgcggtgtttccaaatgctcca 306  Q
    |||||| || || | ||||||||||||||||||    
T  191655 aactctgaggttcctgtgtttccaaatgctcca 191687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 254 - 317
Target Start/End: Complemental strand, 9958736 - 9958673
Alignment:
Q  254 gtttctgtgacatcttcccaaactctaagattgcggtgtttccaaatgctccacatgacagttg 317  Q
    |||||||| ||||| ||| ||||||||||||| | ||||||||| | |||||| ||||||||||    
T  9958736 gtttctgtaacatcgtcctaaactctaagattacagtgtttccataagctccatatgacagttg 9958673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 30588579 - 30588447
Alignment:
Q  174 ttgatgcaagaacctcgggagtgttagctagctgccaatcaataaccatattcctggctcagtccaccaccgtagcgctggtttctgtgacatcttccca 273  Q
    |||||||||||||| |  |||| ||||| || |  |||||||  |||||||| || || || ||||| || || || || |||||| ||||||  |||||    
T  30588579 ttgatgcaagaaccacatgagtattagccagttttcaatcaacgaccatatttctagcacactccactactgttgcactagtttctatgacattatccca 30588480  T
Q  274 aactctaagattgcggtgtttccaaatgctcca 306  Q
    |||||| || ||  |||||||||||||||||||    
T  30588479 aactctgaggttttggtgtttccaaatgctcca 30588447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0414 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 313
Target Start/End: Original strand, 9879 - 9928
Alignment:
Q  264 catcttcccaaactctaagattgcggtgtttccaaatgctccacatgaca 313  Q
    |||| |||||||||| |||||| ||||||||||| | |||||||||||||    
T  9879 catcgtcccaaactcgaagatttcggtgtttccataagctccacatgaca 9928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University