View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12569_low_7 (Length: 287)
Name: NF12569_low_7
Description: NF12569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12569_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 10 - 278
Target Start/End: Original strand, 43010117 - 43010384
Alignment:
| Q |
10 |
atacttctactccgcttaacccctccccagagaaaatccctctaaatgcgaacaatcttcttccaaatcaaaagcggcattttcatgaccgacaaataga |
109 |
Q |
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| T |
43010117 |
atacttctactctgcttaacccctccttagagaaaatccctctaaatgcgaacaatcttcttccaaaccaaaagcggcattttcatgaccgaaaaataga |
43010216 |
T |
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| Q |
110 |
aagtaggaatcacattaagagcagagttaagaaaggaccaccctacccctaaggctcacatacttgttaccccgggacccaagtctattggtcagagaaa |
209 |
Q |
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| T |
43010217 |
aagtaggaatcacattaagaacagagttaagaa-ggaccaccctacccctaaggctcacatacttgttaccccgggacccaagtctactggtcagagaaa |
43010315 |
T |
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| Q |
210 |
gaagaaggggttgccaagttttctcaaggcggggattagcaccaacagacaaacctatataagtgaacg |
278 |
Q |
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| T |
43010316 |
gaagaaggggttgccaagttttctcaaggtggggattagcaccaacaggcaaacctagataagtgaacg |
43010384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 26559010 - 26559055
Alignment:
| Q |
31 |
cctccccagagaaaatccctctaaatgcgaacaatcttcttccaaa |
76 |
Q |
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| T |
26559010 |
cctccccaaaggaaatccctctaaaggcgaacaatcttcttccaaa |
26559055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 29681659 - 29681595
Alignment:
| Q |
10 |
atacttctactccgcttaacccctccccagagaaaatccctctaaatgcgaacaatcttcttcca |
74 |
Q |
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| T |
29681659 |
atactcctactctgcttcacccctcccaaaaggaaatccatctgaatgcgaacaatcttcttcca |
29681595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 10993362 - 10993297
Alignment:
| Q |
9 |
gatacttctactccgcttaacccctccccagagaaaatccctctaaatgcgaacaatcttcttcca |
74 |
Q |
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|||||| ||||||||||| ||||||||||| || || ||||| | || ||| |||||||||||||| |
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| T |
10993362 |
gatactcctactccgcttcacccctccccaaaggaattccctttgaaggcgcacaatcttcttcca |
10993297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 24603762 - 24603667
Alignment:
| Q |
34 |
ccccagagaaaatccctctaaatgcgaacaatcttcttccaaatcaaaagcggcattttcatgaccgacaaatagaaagtaggaatcacattaaga |
129 |
Q |
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||||| ||||| ||||||| || || |||||||||||||| | ||||| ||||||||||||||||||| ||||| || |||| ||||||||| |
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| T |
24603762 |
ccccaaagaaactccctctgaagacgcacaatcttcttccacaccaaaacgggcattttcatgaccgacatgtagaagatatgaatgacattaaga |
24603667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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