View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12569_low_9 (Length: 257)

Name: NF12569_low_9
Description: NF12569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12569_low_9
NF12569_low_9
[»] chr5 (2 HSPs)
chr5 (21-240)||(1759345-1759555)
chr5 (151-211)||(1754206-1754265)
[»] chr4 (25 HSPs)
chr4 (144-215)||(27480013-27480084)
chr4 (145-215)||(27474004-27474074)
chr4 (142-215)||(27513731-27513804)
chr4 (144-215)||(27505659-27505730)
chr4 (122-215)||(27487095-27487188)
chr4 (144-215)||(27460590-27460661)
chr4 (144-215)||(27502092-27502163)
chr4 (144-215)||(27523360-27523431)
chr4 (144-215)||(27526069-27526140)
chr4 (157-215)||(27444764-27444822)
chr4 (145-215)||(27466933-27467003)
chr4 (145-215)||(27516567-27516637)
chr4 (144-215)||(27469572-27469643)
chr4 (146-215)||(27567367-27567436)
chr4 (159-215)||(27557601-27557657)
chr4 (144-215)||(27476799-27476870)
chr4 (60-118)||(27474102-27474160)
chr4 (157-215)||(27498527-27498585)
chr4 (157-208)||(27431118-27431169)
chr4 (47-118)||(27469683-27469754)
chr4 (144-215)||(27500295-27500366)
chr4 (157-215)||(27554421-27554479)
chr4 (158-215)||(27501429-27501486)
chr4 (180-215)||(27495648-27495683)
chr4 (151-215)||(27507777-27507841)
[»] chr3 (3 HSPs)
chr3 (157-215)||(50904762-50904820)
chr3 (153-215)||(38028732-38028794)
chr3 (153-215)||(38040047-38040109)
[»] chr8 (1 HSPs)
chr8 (153-215)||(21604720-21604782)


Alignment Details
Target: chr5 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 21 - 240
Target Start/End: Complemental strand, 1759555 - 1759345
Alignment:
Q  21 cagagaagaattatagaaatatgaagttttacattcaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtctt 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  1759555 cagagaagaattatagaaatatgaagttttacatccaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttctacaaaaattggtctt 1759456  T
Q  121 ttgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattggaattgg 220  Q
    ||||||| ||||||||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||      |||||    
T  1759455 ttgatattttcagaga---gctgattcaattcaagtgagaagtgatatctaagaaaacttcttctctgcaaagaatggtgagaccaccc------attgg 1759365  T
Q  221 atggttgtattcaaattgtt 240  Q
    ||||||||||||||||||||    
T  1759364 atggttgtattcaaattgtt 1759345  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 211
Target Start/End: Original strand, 1754206 - 1754265
Alignment:
Q  151 tcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccat 211  Q
    ||||| ||||||||||||||||||||| || |||||| ||| |||| ||||||||||||||    
T  1754206 tcaagcgagaagtgatatctaagaaaaggt-ttctctacaaggaatagtgagaccacccat 1754265  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 27480084 - 27480013
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||||||| | ||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  27480084 attcaattcaagtgagaattaatatctaagaaaatgtcttctctgcaaggaatggtgagaccacccattgga 27480013  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 27474074 - 27474004
Alignment:
Q  145 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||    
T  27474074 ttcaattcaagcgagaagtgatgtctaagaaaacgtcttctccgcaaggaatggtgagaccacccattgga 27474004  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 27513731 - 27513804
Alignment:
Q  142 tgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||| ||||||||||||||||||| || |||||||||||| |||| ||||||||||||||||||    
T  27513731 tgattcaattcaagcgagaagtgatatctaagaatacttcttctctgcaaggaatagtgagaccacccattgga 27513804  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27505659 - 27505730
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||||||| |||||||||||||||  |||||||||||| |||| ||||||||||||||||||    
T  27505659 attcaattcaagtgagaaatgatatctaagaaaatctcttctctgcaaggaatagtgagaccacccattgga 27505730  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 215
Target Start/End: Complemental strand, 27487188 - 27487095
Alignment:
Q  122 tgatatcttcagagagctgctgattcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||| ||| ||  | |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||||||||||    
T  27487188 tgatatcttcaaagaactaataattcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagtaagaccacccattgga 27487095  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 27460661 - 27460590
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||| | |||||||| |||||||| ||||||| ||||||||||||| |||||||||||||||||||||||    
T  27460661 attcaaattaagtgagaggtgatatccaagaaaatgtcttctctgcaaggaatggtgagaccacccattgga 27460590  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27502092 - 27502163
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||| |||||||| |||||||||||||||| ||||||||||||| |||| || |||||||||||||||    
T  27502092 attcaatttaagtgagaggtgatatctaagaaaatgtcttctctgcaaggaatagttagaccacccattgga 27502163  T

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Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27523360 - 27523431
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||||||||| ||||||||||||| ||||||| ||||| |||| || |||||||||||||||    
T  27523360 attcaattcaagtgagaagtaatatctaagaaaatgtcttctttgcaaggaatagttagaccacccattgga 27523431  T

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Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27526069 - 27526140
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||  |||||||||| |||||||||||||||||||||||| |||| |||||||||||| |||||    
T  27526069 attcaattcaaacgagaagtgatctctaagaaaacgtcttctctgcaaggaatagtgagaccacccgttgga 27526140  T

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Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 27444764 - 27444822
Alignment:
Q  157 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  27444764 gagaagtaatatctaagaaaacgtcttctctgcaaggaattgtgagaccacccattgga 27444822  T

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Target: chr4; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 27467003 - 27466933
Alignment:
Q  145 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||  ||||||||| ||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  27467003 ttcaattcaagctagaagtgatgtctaagaaaacttcttctctgcaaggaatagtgagaccacccattgga 27466933  T

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Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 27516567 - 27516637
Alignment:
Q  145 ttcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||| ||||||||||||||||||||| |||||| ||||| |||| |||||||| |||||||||    
T  27516567 ttcaattcaagttagaagtgatatctaagaaaacttcttctttgcaaggaatagtgagaccccccattgga 27516637  T

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Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 27469643 - 27469572
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||| |||||||| ||||||||||||||||  |||||||||||| |||| || |||||||||||||||    
T  27469643 attcaattgaagtgagaggtgatatctaagaaaatttcttctctgcaaggaatagttagaccacccattgga 27469572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 146 - 215
Target Start/End: Complemental strand, 27567436 - 27567367
Alignment:
Q  146 tcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||||||||||||  ||||||||| | ||||| |||||| |||| ||||||||||||||||||    
T  27567436 tcaattcaagtgagaagtgagttctaagaaagcatcttcgctgcaaggaattgtgagaccacccattgga 27567367  T

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Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 27557657 - 27557601
Alignment:
Q  159 gaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||||||||| |||||||||||  |||| ||||||||||||||||||    
T  27557657 gaagtgatatctaagaaaacatcttctctgcatggaatagtgagaccacccattgga 27557601  T

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Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 27476870 - 27476799
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||| |||||||| || ||||| ||||||| ||||||||||||| |||| || |||||||||||||||    
T  27476870 attcaatttaagtgagaggtaatatccaagaaaatgtcttctctgcaaggaatagttagaccacccattgga 27476799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 118
Target Start/End: Complemental strand, 27474160 - 27474102
Alignment:
Q  60 taacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtc 118  Q
    |||||| |||||| |||||||||||||||| ||||||||||||  ||||||||||||||    
T  27474160 taacaacaaaagtgaaaatcttttgaaggttagaaactaaagtgctacaaaaattggtc 27474102  T

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Target: chr4; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 27498585 - 27498527
Alignment:
Q  157 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||||||||||| | |||||||| |||| |||| ||||||||||||||||||    
T  27498585 gagaagtgatatctaagaacatgtcttctccgcaaggaatagtgagaccacccattgga 27498527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 208
Target Start/End: Original strand, 27431118 - 27431169
Alignment:
Q  157 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacc 208  Q
    ||||||| |||| |||||||||||||||||||||| |||| |||||||||||    
T  27431118 gagaagtaatatttaagaaaacgtcttctctgcaaggaattgtgagaccacc 27431169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 27469754 - 27469683
Alignment:
Q  47 ttttacattcaagtaacaagaaaagtaaaaatcttttgaaggtaagaaactaaagttgtacaaaaattggtc 118  Q
    |||||||| ||| | |||| |||||| ||||||||||||||||| |||||||||||  ||||||||| ||||    
T  27469754 ttttacatccaaattacaacaaaagtgaaaatcttttgaaggtatgaaactaaagtgctacaaaaatgggtc 27469683  T

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Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 27500295 - 27500366
Alignment:
Q  144 attcaattcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||||  ||||||||  |||||||||| ||||||||||||| |||| ||||  ||||||||||||    
T  27500295 attcaattcaagcaagaagtgaattctaagaaaaggtcttctctgcaaggaatagtgatgccacccattgga 27500366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 27554479 - 27554421
Alignment:
Q  157 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||| ||||||||||||||||||||||| ||| |||| ||||||| |||| |||||    
T  27554479 gagaagtaatatctaagaaaacgtcttctctacaaggaattgtgagactacccgttgga 27554421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 27501486 - 27501429
Alignment:
Q  158 agaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||||||||| | ||||||||| ||| |||| |||||||||||| |||||    
T  27501486 agaagtgatatctaagaacatgtcttctctacaaggaatagtgagaccacccgttgga 27501429  T

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Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 215
Target Start/End: Complemental strand, 27495683 - 27495648
Alignment:
Q  180 tcttctctgcaaagaatggtgagaccacccattgga 215  Q
    |||||||||||| |||||||||||||||||||||||    
T  27495683 tcttctctgcaaggaatggtgagaccacccattgga 27495648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Original strand, 27507777 - 27507841
Alignment:
Q  151 tcaagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||| |||||||||||||||||||||  ||||||   ||| |||| || |||||||||||||||    
T  27507777 tcaagcgagaagtgatatctaagaaaagatcttcttcacaaggaattgtaagaccacccattgga 27507841  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 50904762 - 50904820
Alignment:
Q  157 gagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||||  || ||||| |||||||||||| |||||||||| ||||||||||||    
T  50904762 gagaagtgatatgcaaaaaaacctcttctctgcaaggaatggtgaggccacccattgga 50904820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 38028732 - 38028794
Alignment:
Q  153 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||||    
T  38028732 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattgga 38028794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 38040047 - 38040109
Alignment:
Q  153 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||||    
T  38040047 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattgga 38040109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 215
Target Start/End: Original strand, 21604720 - 21604782
Alignment:
Q  153 aagtgagaagtgatatctaagaaaacgtcttctctgcaaagaatggtgagaccacccattgga 215  Q
    ||||||||||| ||||  ||||||||||||||| ||||| |||| ||||| || |||||||||    
T  21604720 aagtgagaagtaatatgcaagaaaacgtcttctgtgcaaggaattgtgaggccgcccattgga 21604782  T

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