View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1256_high_1 (Length: 553)
Name: NF1256_high_1
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 2 - 532
Target Start/End: Original strand, 17507009 - 17507538
Alignment:
| Q |
2 |
ttttgacaccccttagttttatacctggatcgcaagtacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaaatt |
101 |
Q |
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||||| |||||| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17507009 |
ttttgtcaccccatagttttatacctggattgcgagcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaa-tt |
17507107 |
T |
|
| Q |
102 |
gaggcattgaagttcaacatcagcaacagcttcaacaaaatcaacaccacggttattacaaagaagctcaggttcacccacagaattggacacaacttca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17507108 |
gaggcattgaagttcaacatcagcaacagcttcaacaaaatcaacaccacgattattacaaagaagctcaggttcacccacagaattggacacaacttca |
17507207 |
T |
|
| Q |
202 |
cctgcaaatgcatagtatgagaccaaaaccttagccaatgctttcttgagagacacaaccatagattcaaaggttaatatcatgggattcttgtaacnnn |
301 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17507208 |
cctgcaaaggcatagtatgagaccaaaaccttagccaatgccttcttgagagacacaaccatagattcaaaggttaatatcatgggattcttgtaacaaa |
17507307 |
T |
|
| Q |
302 |
nnnncacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagccaatgttcttgtattggtaacactgctgccactacctcttcatt |
401 |
Q |
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| T |
17507308 |
agaacacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagccaatgttcttgtattggtaacactgctgccactacctcttcatt |
17507407 |
T |
|
| Q |
402 |
tgtcacactcactatgaaattatcttcatttccaatacccatattcttagatataattaagtaaggatattgatgggtgttgttaaattgattgtagttt |
501 |
Q |
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| T |
17507408 |
tgtcacactcacaatgaaattatctccatttccaatacccatattcttagatataattaagtaaggatattgatgggtgttgttaaattgattgtagttt |
17507507 |
T |
|
| Q |
502 |
ggcaaagtggttgtgttgtgtatatatatat |
532 |
Q |
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| T |
17507508 |
ggcaaagtggttgtgttgtgtatatatatat |
17507538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 522
Target Start/End: Original strand, 17484734 - 17485271
Alignment:
| Q |
2 |
ttttgacaccccttagttttatacctggatcgcaagtacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaaatt |
101 |
Q |
| |
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||||| |||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
17484734 |
ttttgtcaccccttagttttatacctggattgcgagcacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaa-tt |
17484832 |
T |
|
| Q |
102 |
gaggcattgaagttcaacatcagcaacagcttcaacaaaatcaacaccacggttattacaaagaagctcaggttcacccacagaattggacacaacttca |
201 |
Q |
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| T |
17484833 |
gaggcattgaagctcaacatcagcaacagcttcaacaaaatcaacaccacggttattacaaagaatctcaggttcacccacagaattggacacaacttca |
17484932 |
T |
|
| Q |
202 |
cctgcaaatgcatagtatgagaccaaaaccttagccaatgctttcttgagagacacaaccatagattcaaaggttaat---------------------a |
280 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| | |
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| T |
17484933 |
cctgcaaatgcatagtatgagaccaaaaccttagctaatgccttcttgagagacacaaccatagaatcaaaggttaataacgttgttgaagtggacaata |
17485032 |
T |
|
| Q |
281 |
tcatgggattcttgtaacnnnnnnncacaccaacatccactgcaggtagaagtaaatcaaggttagagagtggtagccaatgttcttgtattggtaacac |
380 |
Q |
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||| ||||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||||||| || |||||||||| |||||||||||| |
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| T |
17485033 |
acattggattcttgtaacaaaagaacacaccaacatccaatgcaggtagaagtaagtcaagattagagagtgggaggcaatgttcttttattggtaacac |
17485132 |
T |
|
| Q |
381 |
tgctgccactacctcttcatttgtcacactcactatgaaattatcttcatttccaataccca-tattcttagatataattaagtaaggatattgatgggt |
479 |
Q |
| |
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||||| |||||||||||||||||| |||||||| |||||||||||| ||||||||||||||| | | ||||||| ||| |||||||||||| |||| |
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| T |
17485133 |
tgctgtcactacctcttcatttgttacactcacaatgaaattatctccatttccaatacccattgctgttagata----taactaaggatattgaagggt |
17485228 |
T |
|
| Q |
480 |
gttgttaaattgattgtagtttggcaaagtggttgtgttgtgt |
522 |
Q |
| |
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||||| |||||||||||||||||| |||| |||||| ||||| |
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| T |
17485229 |
tttgtttaattgattgtagtttggcgaagtagttgtgctgtgt |
17485271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 181
Target Start/End: Original strand, 39587365 - 39587431
Alignment:
| Q |
115 |
tcaacatcagcaacagcttcaacaaaatcaacaccacggttattacaaagaagctcaggttcaccca |
181 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||| |
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| T |
39587365 |
tcaacatcagcaacagcttcaacaaaatccacaccacggttattgcaaagtagctcaggttcaccca |
39587431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 39544853 - 39545000
Alignment:
| Q |
33 |
gcaagtacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaaattgaggcattgaagttcaacatcagcaacagct |
132 |
Q |
| |
|
||||| || ||||| |||||||| ||||||| ||| |||||||||| |||||| || ||||| ||| ||||| |||| | ||||||||||||| |||| |
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| T |
39544853 |
gcaagcacaccatgtttcttctttggaacaagcttcccttcaacagtttcatctggattatacaaa-ttgagagattgtaactcaacatcagcaaaagct |
39544951 |
T |
|
| Q |
133 |
tcaacaaaatcaacaccacggttattacaaagaagctcaggttcaccca |
181 |
Q |
| |
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||||||||||| || ||||| || || ||||| | |||||||||||||| |
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| T |
39544952 |
tcaacaaaatccactccacgattgttgcaaagtaactcaggttcaccca |
39545000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 181
Target Start/End: Original strand, 39554167 - 39554314
Alignment:
| Q |
33 |
gcaagtacgccatgcttcttcttaggaacaaactttccttcaacagattcatcagggttataaaaaattgaggcattgaagttcaacatcagcaacagct |
132 |
Q |
| |
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||||| || ||||| |||||||| ||||||| || |||||||||| |||||| || ||||| ||| ||||| |||| | ||||||||||||| |||| |
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| T |
39554167 |
gcaagcacaccatgtttcttctttggaacaagtttcccttcaacagtttcatctggattatacaaa-ttgagagattgtaactcaacatcagcaaaagct |
39554265 |
T |
|
| Q |
133 |
tcaacaaaatcaacaccacggttattacaaagaagctcaggttcaccca |
181 |
Q |
| |
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||||||||||| || ||||| || || ||||| | |||||||||||||| |
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| T |
39554266 |
tcaacaaaatccactccacgattgttgcaaagtaactcaggttcaccca |
39554314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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