View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1256_high_2 (Length: 460)
Name: NF1256_high_2
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 3 - 431
Target Start/End: Original strand, 20824638 - 20825066
Alignment:
| Q |
3 |
catctccaacaatatatcatcccttcaacatcatgttcatcattcttcatcacttgtttcccaaacccataaaatattcaccatcatccttcatcacttg |
102 |
Q |
| |
|
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20824638 |
catcttcaacactatatcatcccttcaacatcatgttcatcattcttcatcacttgtttcccaaacccataaaatattcaccatc---cttcatcacttg |
20824734 |
T |
|
| Q |
103 |
tatgggaagaatccaatttgtttctactctctcctcaaactcgaatgcaattttgatcactccccaaattctccttgtgttatcgctaacaacatcaaaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20824735 |
tatgggaagaatccaatttgtttctactctctcctcaaactcgaatgcaattttgatcactccccaaattctccttgtgttatcgctaacaacatcaaaa |
20824834 |
T |
|
| Q |
203 |
ttctaaaccatgttttttattctatcatatgctttctttattccttctcacaaagacttcttaattaattatacgaaactcaatagaaatgttaccttca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20824835 |
ttctaaaccatgttttttattctatcatatgctttctttattccttctcacaaagacttcttaattaattatacgaaactcaatagaaatgttaccttca |
20824934 |
T |
|
| Q |
303 |
---cgtcaaatttccaatatgtgataccttcaattcatctaccttcaatttcaatcaccatacaaaactgaaacttcctcatcaccaattctgattcctc |
399 |
Q |
| |
|
| ||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20824935 |
cttcctcagattttcaatatgtgataccttcaattcatctaccttcaatttcaaccaccatacaaaactgaaacttcctcatcaccaattcagattcctc |
20825034 |
T |
|
| Q |
400 |
tctctaatttcataccaaacaccacacaatca |
431 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |
|
|
| T |
20825035 |
tctctaatttcataccaaacgccacacaatca |
20825066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University