View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1256_high_7 (Length: 252)
Name: NF1256_high_7
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 10364439 - 10364593
Alignment:
| Q |
1 |
gtcgtctgtcaactgatgtgggactctttaacatggtccaacctaaattttaatatgatgtatagcttatccaagattggtgcaactctagatgttcaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10364439 |
gtcgtctgtcaactgatgtgggactctttaacatggtccaacccaaattttaatatgatctatagcttatccaagattggtgccactctagatgttcaat |
10364538 |
T |
|
| Q |
101 |
cccaggcgtgataggtttgttaagagcatccacaatggtagtccactaataagga |
155 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10364539 |
cctaggcgtgataggtttgttaagagcatccacaatggtagtccactaataagga |
10364593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 19141979 - 19141947
Alignment:
| Q |
123 |
agagcatccacaatggtagtccactaataagga |
155 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |
|
|
| T |
19141979 |
agagcatccacaatggtagtccattaataagga |
19141947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University