View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1256_low_11 (Length: 376)

Name: NF1256_low_11
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1256_low_11
NF1256_low_11
[»] chr7 (16 HSPs)
chr7 (237-376)||(19104018-19104157)
chr7 (307-376)||(26154810-26154879)
chr7 (288-376)||(26184860-26184948)
chr7 (298-376)||(26190863-26190941)
chr7 (288-376)||(26082318-26082406)
chr7 (288-376)||(26106105-26106193)
chr7 (315-373)||(26301426-26301484)
chr7 (307-373)||(26178690-26178756)
chr7 (307-365)||(26242004-26242062)
chr7 (320-373)||(26186290-26186343)
chr7 (316-365)||(26250461-26250510)
chr7 (336-376)||(26203530-26203570)
chr7 (56-111)||(37820083-37820138)
chr7 (307-365)||(26297052-26297110)
chr7 (140-190)||(37820083-37820133)
chr7 (324-376)||(26128191-26128243)
[»] chr4 (1 HSPs)
chr4 (288-376)||(44902828-44902917)
[»] chr8 (2 HSPs)
chr8 (59-100)||(43925476-43925517)
chr8 (143-184)||(43925476-43925517)


Alignment Details
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 237 - 376
Target Start/End: Complemental strand, 19104157 - 19104018
Alignment:
Q  237 aaagagaaactatacttaaatatcaactcacatgaattgaaccaaacttcaacctcatagatttcaaaaacaacaatggaatctcaacaatcccataacc 336  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  19104157 aaagagaaactagacttaaatatcaactcacaggaattgaaccaaacttccacctcatagatttcaaaaacaacaatggaatctcaacaatcccataacc 19104058  T
Q  337 aacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  19104057 aacttcatgtaacttttcttccatatccaactccaggcca 19104018  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 376
Target Start/End: Original strand, 26154810 - 26154879
Alignment:
Q  307 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  26154810 caacaatggagtctcaacaatcccataaccaacttcatgtaacttttcttccacatccaagtcctggcca 26154879  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 26184860 - 26184948
Alignment:
Q  288 acctcatagatttcaaaaacaacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||||||| ||||| |||||||||| || ||| ||||||||||| |||||||||||| |||| ||||||||||||||||||||||    
T  26184860 acctcatagattccaaaagcaacaatggactcccaataatcccataacaaacttcatgtaatttttgttccatatccaactcctggcca 26184948  T

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Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 298 - 376
Target Start/End: Original strand, 26190863 - 26190941
Alignment:
Q  298 tttcaaaaacaacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||| ||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  26190863 tttcaaaagcaataatgaaatctcaacaatcccataacccacttcatgtaacttttcttccatttccatctcctggcca 26190941  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 26082318 - 26082406
Alignment:
Q  288 acctcatagatttcaaaaacaacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||||||| | ||  |||||||||| ||||||||||| ||||||||||||||  ||| |||| ||||||||||||||||||||||    
T  26082318 acctcatagattcctaacccaacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggcca 26082406  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 26106105 - 26106193
Alignment:
Q  288 acctcatagatttcaaaaacaacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||||||||| | ||  |||||||||| ||||||||||| ||||||||||||||  ||| |||| ||||||||||||||||||||||    
T  26106105 acctcatagattcctaacccaacaatggagtctcaacaatctcataaccaacttcagataatttttgttccatatccaactcctggcca 26106193  T

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Target: chr7; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 315 - 373
Target Start/End: Original strand, 26301426 - 26301484
Alignment:
Q  315 gaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctgg 373  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  26301426 gaatctcaacaatccaataaccaacttcatgtaatttttcttccatttccaactcctgg 26301484  T

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Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 373
Target Start/End: Original strand, 26178690 - 26178756
Alignment:
Q  307 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctgg 373  Q
    |||||||||| |||||||||||||||||| ||||||||||   ||||||||||| ||||||||||||    
T  26178690 caacaatggagtctcaacaatcccataacaaacttcatgttgtttttcttccatttccaactcctgg 26178756  T

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Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 26242004 - 26242062
Alignment:
Q  307 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatcca 365  Q
    ||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||    
T  26242004 caacaatggaatctcaacaatcccataacaaacttcatgttgtttttcttccatatcca 26242062  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 26186290 - 26186343
Alignment:
Q  320 tcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctgg 373  Q
    ||||||||| || |||||||||||| ||| ||||||||||| ||||||||||||    
T  26186290 tcaacaatctcacaaccaacttcatataatttttcttccatttccaactcctgg 26186343  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 316 - 365
Target Start/End: Original strand, 26250461 - 26250510
Alignment:
Q  316 aatctcaacaatcccataaccaacttcatgtaacttttcttccatatcca 365  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||||||    
T  26250461 aatctcaacaatccaataaccaacttcatgttgtttttcttccatatcca 26250510  T

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Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 376
Target Start/End: Original strand, 26203530 - 26203570
Alignment:
Q  336 caacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    ||||| ||||||||||||||||||| |||||||||||||||    
T  26203530 caactgcatgtaacttttcttccatttccaactcctggcca 26203570  T

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Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 111
Target Start/End: Original strand, 37820083 - 37820138
Alignment:
Q  56 attgataagattttaaaagaataacataatttaatgtaatcacaaatgtcactgtc 111  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||| ||||| ||||    
T  37820083 attgataaaattttgaaaaaataacataatttaatgtaatcgcaagtgtcagtgtc 37820138  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 307 - 365
Target Start/End: Original strand, 26297052 - 26297110
Alignment:
Q  307 caacaatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatcca 365  Q
    |||||||||| |||||||||||| ||||| ||||||||||    |||||||||||||||    
T  26297052 caacaatggagtctcaacaatccaataacaaacttcatgttgtctttcttccatatcca 26297110  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 37820083 - 37820133
Alignment:
Q  140 attgataagattttaaaagaataacataatttaatgtaatcacaaatgtca 190  Q
    |||||||| ||||| ||| |||||||||||||||||||||| ||| |||||    
T  37820083 attgataaaattttgaaaaaataacataatttaatgtaatcgcaagtgtca 37820133  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 324 - 376
Target Start/End: Original strand, 26128191 - 26128243
Alignment:
Q  324 caatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||| ||||||||||||||||||   ||||||| ||||||||| |||||||||    
T  26128191 caattccataaccaacttcatgttgtttttctttcatatccaagtcctggcca 26128243  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 44902828 - 44902917
Alignment:
Q  288 acctcatagatttcaaaaacaa-caatggaatctcaacaatcccataaccaacttcatgtaacttttcttccatatccaactcctggcca 376  Q
    |||||| ||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  44902828 acctcaaagatttcaaaagcaaacaatggattctcaacaatccaataaccaacttcatgtagtttttcttccatatccaactcctggcca 44902917  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 100
Target Start/End: Original strand, 43925476 - 43925517
Alignment:
Q  59 gataagattttaaaagaataacataatttaatgtaatcacaa 100  Q
    ||||| ||||||||| |||||||||||||||| |||||||||    
T  43925476 gataaaattttaaaaaaataacataatttaatttaatcacaa 43925517  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 43925476 - 43925517
Alignment:
Q  143 gataagattttaaaagaataacataatttaatgtaatcacaa 184  Q
    ||||| ||||||||| |||||||||||||||| |||||||||    
T  43925476 gataaaattttaaaaaaataacataatttaatttaatcacaa 43925517  T

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