View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1256_low_15 (Length: 330)

Name: NF1256_low_15
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1256_low_15
NF1256_low_15
[»] chr2 (7 HSPs)
chr2 (1-305)||(14373190-14373494)
chr2 (2-66)||(43586007-43586071)
chr2 (2-67)||(44605140-44605205)
chr2 (31-72)||(16630817-16630858)
chr2 (31-68)||(22131254-22131291)
chr2 (10-66)||(18512144-18512200)
chr2 (6-66)||(18570969-18571029)
[»] chr5 (11 HSPs)
chr5 (2-66)||(10010547-10010611)
chr5 (2-71)||(32444759-32444828)
chr5 (16-72)||(30080497-30080553)
chr5 (15-55)||(42192282-42192322)
chr5 (31-62)||(10009848-10009879)
chr5 (31-70)||(14818301-14818340)
chr5 (31-68)||(10948658-10948695)
chr5 (40-73)||(31572648-31572681)
chr5 (10-71)||(9031920-9031983)
chr5 (31-71)||(38749560-38749600)
chr5 (31-71)||(43208271-43208311)
[»] chr1 (6 HSPs)
chr1 (2-73)||(40176596-40176667)
chr1 (31-73)||(14332430-14332472)
chr1 (31-66)||(31667447-31667482)
chr1 (31-66)||(50195467-50195502)
chr1 (31-68)||(30847720-30847757)
chr1 (10-66)||(28170383-28170438)
[»] chr7 (12 HSPs)
chr7 (16-73)||(1885580-1885637)
chr7 (2-66)||(5937423-5937487)
chr7 (2-66)||(22801743-22801807)
chr7 (31-73)||(44172885-44172927)
chr7 (31-66)||(25956467-25956502)
chr7 (31-66)||(36013800-36013835)
chr7 (37-71)||(3142075-3142109)
chr7 (16-61)||(2144546-2144591)
chr7 (31-64)||(38134410-38134443)
chr7 (31-59)||(2143862-2143890)
chr7 (6-66)||(17285061-17285121)
chr7 (37-73)||(23128656-23128692)
[»] chr4 (11 HSPs)
chr4 (31-71)||(37496726-37496766)
chr4 (7-71)||(11797625-11797692)
chr4 (10-66)||(13117430-13117486)
chr4 (31-71)||(18513238-18513278)
chr4 (38-73)||(41584570-41584605)
chr4 (52-94)||(6916437-6916479)
chr4 (16-66)||(13307884-13307934)
chr4 (31-68)||(40224498-40224535)
chr4 (31-71)||(22799890-22799930)
chr4 (10-66)||(44362667-44362723)
chr4 (31-71)||(53622591-53622631)
[»] chr8 (6 HSPs)
chr8 (31-66)||(31548295-31548330)
chr8 (31-66)||(10002165-10002200)
chr8 (8-66)||(27733846-27733904)
chr8 (2-68)||(42874515-42874581)
chr8 (2-62)||(26915246-26915306)
chr8 (31-71)||(31681827-31681867)
[»] chr6 (11 HSPs)
chr6 (30-89)||(7942276-7942335)
chr6 (16-71)||(19369824-19369879)
chr6 (16-66)||(6751884-6751934)
chr6 (31-64)||(10158006-10158039)
chr6 (31-71)||(785452-785492)
chr6 (30-73)||(602663-602706)
chr6 (10-60)||(10031571-10031621)
chr6 (6-56)||(31430277-31430327)
chr6 (31-71)||(9024173-9024213)
chr6 (31-67)||(10335377-10335413)
chr6 (2-66)||(34868159-34868223)
[»] scaffold0024 (1 HSPs)
scaffold0024 (2-71)||(18105-18174)
[»] chr3 (7 HSPs)
chr3 (31-71)||(44427863-44427903)
chr3 (3-66)||(49179717-49179780)
chr3 (16-66)||(14338485-14338535)
chr3 (31-69)||(30184105-30184143)
chr3 (31-68)||(1502596-1502633)
chr3 (2-58)||(34409352-34409408)
chr3 (31-71)||(47775747-47775787)
[»] scaffold0314 (1 HSPs)
scaffold0314 (16-66)||(8955-9005)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 14373494 - 14373190
Alignment:
Q  1 cacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgttgaacactaacacatgtcaaacatcggga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||    
T  14373494 cacacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgttgaacactaagacatgtcgaaaatcggga 14373395  T
Q  101 cacgcttttgatcagaggtgtcaatactacaaagataactattaacatatttaaagaaagcagtggcatatacagtctacaacgaaccaaggcttgaaaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  14373394 cacgcttttgatcagaggtgtcaatactacaaagataactattaacatatttaaagaaagcagtggcatatacagtctacaacgaaccaatgcttgaaaa 14373295  T
Q  201 ttgttcgaaactttaactacaaccatgtcaatcctcgttggtaaaacctcgtagtattactcgtcagcacaactaaacatgaccaatcggtgtcaattca 300  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  14373294 ttgttcgaaactctaactacaaccatgtcaatcctcgttggtaaaaccttgtagtattactcgtcagcacaactaaacatgaccaatcagtgtcaattca 14373195  T
Q  301 acaaa 305  Q
    |||||    
T  14373194 acaaa 14373190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 43586071 - 43586007
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||  ||||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  43586071 acacgtcaacacagataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 43586007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 44605205 - 44605140
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgtt 67  Q
    |||||||||| ||||||| | |||||   ||| ||||||||||||||||| |||||||||||||||    
T  44605205 acacgtcaacgccaataataatttgagaaaataacataattcaatgtaattacatgtgtcggtgtt 44605140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 16630817 - 16630858
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgtt 72  Q
    |||||||||||||||| |||||||||||||| ||||| ||||    
T  16630817 aatgacataattcaatttaatcacatgtgtcagtgttatgtt 16630858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 22131291 - 22131254
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  22131291 aatgacattgttcaatgtaatcacatgtgtcggtgttg 22131254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 18512200 - 18512144
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||| ||||||||||||   ||| | ||||||||||||||||||||||||| ||||    
T  18512200 acaccgataaaattttgagaaaataatataattcaatgtaatcacatgtgtcagtgt 18512144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 18570969 - 18571029
Alignment:
Q  6 gtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||| |||| | |||||   ||||||||||||||||||||||| ||||||| ||||    
T  18570969 gtcaacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgt 18571029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 10010547 - 10010611
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||| ||||||| |||||||||||||   |||||||||||||| |||||||||||||||||||||    
T  10010547 acacctcaacactaataaaattttgaaaaaatgacataattcattgtaatcacatgtgtcggtgt 10010611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 32444759 - 32444828
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    |||||||||||||| ||| | |||||    |||||||||||||||||||||| |||||||||||| ||||    
T  32444759 acacgtcaacaccattaacaatttgagaagatgacataattcaatgtaatcaaatgtgtcggtgtcgtgt 32444828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 30080553 - 30080497
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgtt 72  Q
    ||||||||||||   ||||||||||||||||||||||||| || ||||||| |||||    
T  30080553 ataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgtt 30080497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 42192282 - 42192322
Alignment:
Q  15 aataaaattttgacgcaatgacataattcaatgtaatcaca 55  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  42192282 aataaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 62
Target Start/End: Original strand, 10009848 - 10009879
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcg 62  Q
    ||||||||||||||||||||||||||||||||    
T  10009848 aatgacataattcaatgtaatcacatgtgtcg 10009879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 14818340 - 14818301
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtg 70  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  14818340 aatgacataattcaatgtaaacatatgtgtcggtgttgtg 14818301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 10948695 - 10948658
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    |||||||| ||| |||||||||||||||||||||||||    
T  10948695 aatgacatgattaaatgtaatcacatgtgtcggtgttg 10948658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 31572681 - 31572648
Alignment:
Q  40 attcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||||| ||||||||||||||||||||||||||    
T  31572681 attcaatataatcacatgtgtcggtgttgtgttg 31572648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 9031983 - 9031920
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcac--atgtgtcggtgttgtgt 71  Q
    ||||| ||||| |||||| | |||||||||||||||| |||||||  | |||||||||||||||    
T  9031983 acaccgataaatttttgaggaaatgacataattcaatctaatcacaaaagtgtcggtgttgtgt 9031920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 38749600 - 38749560
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||| | |||||| ||||||||||    
T  38749600 aatgacataattcaatgtaattatatgtgttggtgttgtgt 38749560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 43208311 - 43208271
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||| || |||| |||||||||    
T  43208311 aatgacataattcaatgtaatcatatctgtctgtgttgtgt 43208271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 73
Target Start/End: Original strand, 40176596 - 40176667
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||||||||||| ||||||||||||   |||||| | |||||||||||||||||||||| |||| ||||||    
T  40176596 acacgtcaacaccgataaaattttgagaaaatgacttcattcaatgtaatcacatgtgtcagtgtcgtgttg 40176667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 73
Target Start/End: Original strand, 14332430 - 14332472
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    |||||||||||||||||||||||||| ||||||||||| ||||    
T  14332430 aatgacataattcaatgtaatcacatatgtcggtgttgcgttg 14332472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 31667447 - 31667482
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||||||||||| |||||||||||||||||||||||    
T  31667447 aatgacataattaaatgtaatcacatgtgtcggtgt 31667482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 50195502 - 50195467
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||||||||||| |||||||||||||||||||||||    
T  50195502 aatgacataattgaatgtaatcacatgtgtcggtgt 50195467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 30847757 - 30847720
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    ||||||||||||||||||||||| ||||||| ||||||    
T  30847757 aatgacataattcaatgtaatcatatgtgtcagtgttg 30847720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 28170383 - 28170438
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||||||||   ||||||||||||||||||||| ||| ||||| ||||    
T  28170383 acaccaataaaattttgaaa-aatgacataattcaatgtaataacaagtgtcagtgt 28170438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 1885580 - 1885637
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||||||| ||||||    
T  1885580 ataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgttg 1885637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 5937487 - 5937423
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||  ||||||||||||   ||||||||||||||||||||||||| ||||| ||||    
T  5937487 acacgtcaacacggataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgt 5937423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 22801807 - 22801743
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||| || |||||||||   |||||||||||||| |||||||||| ||||||||||    
T  22801807 acacgtcaacaccgatcaaattttgagataatgacataattcactgtaatcacaagtgtcggtgt 22801743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 44172927 - 44172885
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  44172927 aatgacataattcaatgtaatcacatgtgtttgtgttgtgttg 44172885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Original strand, 25956467 - 25956502
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||||||||||||||| ||||||||||    
T  25956467 aatgacataattcaatgtaatcacaagtgtcggtgt 25956502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 36013835 - 36013800
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||||||||||||||| ||||||||||    
T  36013835 aatgacataattcaatgtaatcacacgtgtcggtgt 36013800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 3142109 - 3142075
Alignment:
Q  37 ataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||| |||||||||||||||||    
T  3142109 ataattcaatgtaatcatatgtgtcggtgttgtgt 3142075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 2144591 - 2144546
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtc 61  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||    
T  2144591 ataaaattttgagaaaatgacataattcaatgtaatcacacgtgtc 2144546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 38134443 - 38134410
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggt 64  Q
    ||||||||||||||||||||||| ||||||||||    
T  38134443 aatgacataattcaatgtaatcatatgtgtcggt 38134410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 2143890 - 2143862
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtg 59  Q
    |||||||||||||||||||||||||||||    
T  2143890 aatgacataattcaatgtaatcacatgtg 2143862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 6 - 66
Target Start/End: Original strand, 17285061 - 17285121
Alignment:
Q  6 gtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||||||||||||| | |||||   ||||| |||||||||| |||||||||||||| ||||    
T  17285061 gtcaacaccaataataatttgagagaatgatataattcaatttaatcacatgtgtctgtgt 17285121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 23128692 - 23128656
Alignment:
Q  37 ataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    |||||||| |||||||| |||||||||||||||||||    
T  23128692 ataattcagtgtaatcatatgtgtcggtgttgtgttg 23128656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 37496726 - 37496766
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  37496726 aatgacataattcaatgtaatcacaagtgtcggtgttgtgt 37496766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 11797692 - 11797625
Alignment:
Q  7 tcaacaccaataaaattttgacgcaa---tgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    |||||||||||||||||||||   ||   |||||||||| |||||||||||| |||||||||||||||    
T  11797692 tcaacaccaataaaattttgaaaaaaaaatgacataatttaatgtaatcacaagtgtcggtgttgtgt 11797625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 13117430 - 13117486
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||||| ||   ||||||| ||||||||||||||||| ||||||||||    
T  13117430 acaccaataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgt 13117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 18513278 - 18513238
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||| ||||||| |||||||||    
T  18513278 aatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 73
Target Start/End: Original strand, 41584570 - 41584605
Alignment:
Q  38 taattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||| ||||||||||||||||||||||||||||||    
T  41584570 taatttaatgtaatcacatgtgtcggtgttgtgttg 41584605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 6916479 - 6916437
Alignment:
Q  52 cacatgtgtcggtgttgtgttgaacactaacacatgtcaaaca 94  Q
    ||||| ||||||||||||||||||| || ||||||||||||||    
T  6916479 cacatttgtcggtgttgtgttgaacgctgacacatgtcaaaca 6916437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 13307884 - 13307934
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||   ||||||||||||||||||||||||| |||| |||||    
T  13307884 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgt 13307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 40224535 - 40224498
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    |||||||||||| |||||||||| ||||||||||||||    
T  40224535 aatgacataatttaatgtaatcatatgtgtcggtgttg 40224498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 22799930 - 22799890
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||||| ||||| |||| ||||    
T  22799930 aatgacataattcaatgtaatcacacgtgtcagtgtcgtgt 22799890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 44362667 - 44362723
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||| ||||||||||||   |||||||||||| |||||||||||| |||| |||||    
T  44362667 acaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgt 44362723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 53622591 - 53622631
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||| || |||| |||||||||||||||||||||||    
T  53622591 aatgacatacttgaatgcaatcacatgtgtcggtgttgtgt 53622631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 31548330 - 31548295
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||||||||||||||||||||||||||    
T  31548330 aatgacataattcaatgtaatcacatgtgtcggtgt 31548295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 31 - 66
Target Start/End: Complemental strand, 10002200 - 10002165
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||||||||||| |||||||||||||||||||||||    
T  10002200 aatgacataatttaatgtaatcacatgtgtcggtgt 10002165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 27733846 - 27733904
Alignment:
Q  8 caacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||| ||||||||||||   ||||| ||||||||||||||||||| |||| |||||    
T  27733846 caacaccgataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgt 27733904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 42874515 - 42874581
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    ||||||| |||||  ||| |||||||   ||||||||||||||||||||||||| ||||| ||||||    
T  42874515 acacgtcgacaccgttaacattttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttg 42874581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 26915306 - 26915246
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcg 62  Q
    ||||||| ||||  ||||||||||||   |||||||||||| |||||||||||| ||||||    
T  26915306 acacgtcgacacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 31681867 - 31681827
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    |||||||||||| |||| |||||||||||||||||| ||||    
T  31681867 aatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 7942276 - 7942335
Alignment:
Q  30 caatgacataattcaatgtaatcacatgtgtcggtgttgtgttgaacactaacacatgtc 89  Q
    |||||||||||||||||||||||||||||||| ||| ||||| | ||||| |||| ||||    
T  7942276 caatgacataattcaatgtaatcacatgtgtcagtgctgtgtcggacactgacacgtgtc 7942335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 71
Target Start/End: Original strand, 19369824 - 19369879
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||   ||||||||||||||||||||||||| |||||||||| ||||    
T  19369824 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgt 19369879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 6751934 - 6751884
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||   ||||||||||||||||||||||||| ||||||||||    
T  6751934 ataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 6751884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 10158006 - 10158039
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggt 64  Q
    ||||||||||||||||||||||||||||||||||    
T  10158006 aatgacataattcaatgtaatcacatgtgtcggt 10158039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 785492 - 785452
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||||| |||||||||| ||||    
T  785492 aatgacataattcaatgtaatcacaagtgtcggtgtcgtgt 785452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 73
Target Start/End: Original strand, 602663 - 602706
Alignment:
Q  30 caatgacataattcaatgtaatcacatgtgtcggtgttgtgttg 73  Q
    ||||||||||||||||| |||||||||||||| |||| ||||||    
T  602663 caatgacataattcaatataatcacatgtgtcagtgtcgtgttg 602706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 10031571 - 10031621
Alignment:
Q  10 acaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgt 60  Q
    ||||| ||||||||||||   ||||||||||||||||||||||||| ||||    
T  10031571 acaccgataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 56
Target Start/End: Original strand, 31430277 - 31430327
Alignment:
Q  6 gtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacat 56  Q
    ||||||||||||||||||||||   |||||||| ||| |||||||||||||    
T  31430277 gtcaacaccaataaaattttgagaaaatgacatgattaaatgtaatcacat 31430327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 9024213 - 9024173
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||||||||||||||| ||||||| |||| ||||    
T  9024213 aatgacataattcaatgtaatcatatgtgtcagtgtcgtgt 9024173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 10335413 - 10335377
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgtt 67  Q
    |||||||||||| |||||||||| |||||||||||||    
T  10335413 aatgacataattgaatgtaatcagatgtgtcggtgtt 10335377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 34868223 - 34868159
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||| ||||| ||||||||||||   |||  ||||||||||||||||||||| | |||||||    
T  34868223 acacgtcgacaccgataaaattttgagagaatatcataattcaatgtaatcacatttctcggtgt 34868159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 71
Target Start/End: Complemental strand, 18174 - 18105
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||| ||||| ||||||||||||   ||| |||||||||||||||||| || |||| ||||||||||    
T  18174 acacgtcgacaccgataaaattttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtgt 18105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 44427863 - 44427903
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||||||||| |||||||||||||||||||||||| ||||    
T  44427863 aatgacataatccaatgtaatcacatgtgtcggtgtcgtgt 44427903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 49179780 - 49179717
Alignment:
Q  3 cacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    |||||| ||||| ||||||||||||   | ||||||||||| ||||||||||| ||||||||||    
T  49179780 cacgtcgacaccgataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgt 49179717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 14338535 - 14338485
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||   |||||||||||||||||||||||||  |||||||||    
T  14338535 ataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgt 14338485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 69
Target Start/End: Complemental strand, 30184143 - 30184105
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgt 69  Q
    |||||||||||||| |||||| |||||||||||||||||    
T  30184143 aatgacataattcagtgtaattacatgtgtcggtgttgt 30184105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 1502596 - 1502633
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttg 68  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  1502596 aatgacataattgaatgtaatcacatgtgtctgtgttg 1502633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 58
Target Start/End: Complemental strand, 34409408 - 34409352
Alignment:
Q  2 acacgtcaacaccaataaaattttgacgcaatgacataattcaatgtaatcacatgt 58  Q
    ||||||||||||| |||| | || ||   ||||||||||||||||||||||||||||    
T  34409408 acacgtcaacaccgataatacttcgagaaaatgacataattcaatgtaatcacatgt 34409352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 47775747 - 47775787
Alignment:
Q  31 aatgacataattcaatgtaatcacatgtgtcggtgttgtgt 71  Q
    ||||| ||||||||||||||| |||||||| ||||||||||    
T  47775747 aatgatataattcaatgtaattacatgtgttggtgttgtgt 47775787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 8955 - 9005
Alignment:
Q  16 ataaaattttgacgcaatgacataattcaatgtaatcacatgtgtcggtgt 66  Q
    ||||||||||||   ||||||||||||||| ||||||||| ||||||||||    
T  8955 ataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgt 9005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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