View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1256_low_22 (Length: 253)
Name: NF1256_low_22
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 10364463 - 10364360
Alignment:
| Q |
1 |
agtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatccacaatgcttcagatagtatcagtgcctattccaaaatccgttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
10364463 |
agtcccacatcagttgacagacgacatgaataagtgtttataagtgggggcaatccacagtgcttcagatagtatcagtggctattccaaaatccgttgg |
10364364 |
T |
|
| Q |
101 |
gtca |
104 |
Q |
| |
|
|||| |
|
|
| T |
10364363 |
gtca |
10364360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 10364283 - 10364220
Alignment:
| Q |
102 |
tcaacatgtagtataaagataaggattacttacagtggaggtggcattgttgttatgatgatgt |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10364283 |
tcaacatgtagtataaagataaggattacttacagtggaggtggcattgttgttatgatgatgt |
10364220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 38476251 - 38476306
Alignment:
| Q |
1 |
agtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc |
56 |
Q |
| |
|
||||||||||||||||| ||| | | ||||||||| |||||||||||||| ||||| |
|
|
| T |
38476251 |
agtcccacatcagttgagagatggcctgaataagtgtttataagtgggggaaatcc |
38476306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 44931292 - 44931237
Alignment:
| Q |
1 |
agtcccacatcagttgacagacgacatgaataagtatttataagtgggggcaatcc |
56 |
Q |
| |
|
||||||||||| ||||| ||| | | ||||||||| |||||||||||||||||||| |
|
|
| T |
44931292 |
agtcccacatcggttgagagatggcctgaataagtgtttataagtgggggcaatcc |
44931237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 41112906 - 41112950
Alignment:
| Q |
6 |
cacatcagttgacagacgacatgaataagtatttataagtggggg |
50 |
Q |
| |
|
|||||| ||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
41112906 |
cacatcggttgagagatgacatgaataagtatttaaaagtggggg |
41112950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University