View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1256_low_27 (Length: 211)
Name: NF1256_low_27
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 13 - 182
Target Start/End: Complemental strand, 37030572 - 37030403
Alignment:
| Q |
13 |
attaatagctgttgataggaaaataaattacaataatttaagtttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtac |
112 |
Q |
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| T |
37030572 |
attaatagctgttgataggaaaataaattaatataatttaagtttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtac |
37030473 |
T |
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| Q |
113 |
aaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatcgg |
182 |
Q |
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| T |
37030472 |
aaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcatcgg |
37030403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 32593227 - 32593334
Alignment:
| Q |
72 |
tttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcaca |
171 |
Q |
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| T |
32593227 |
tttggatggtttaggtacaagaggctaactgggaattatacaagaaacaaaaagaatcagaagcaattctgtatgagaagaaggcagaggcagaagcaca |
32593326 |
T |
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| Q |
172 |
gaaagcat |
179 |
Q |
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|||||||| |
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| T |
32593327 |
gaaagcat |
32593334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 31527163 - 31527067
Alignment:
| Q |
83 |
taggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcat |
179 |
Q |
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| T |
31527163 |
taggtacaagaggctaactgggaattatacaggaaacaaaaagaagcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcat |
31527067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 51824047 - 51823957
Alignment:
| Q |
89 |
caagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacagaaagcat |
179 |
Q |
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| T |
51824047 |
caagaggctaactgggaattatacaagaaacaaaaagaagcagaagcaattctgtacgagaagaaggcagaggcagaagcacagaaagcat |
51823957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 55 - 182
Target Start/End: Complemental strand, 49187384 - 49187257
Alignment:
| Q |
55 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
154 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| | |||||||||||||||||||||||| |
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| T |
49187384 |
tttttggtgattaaaactttggatggtgtaggtacaagaagcaaactgggagctgtacaagaaacagaaagagactgaagcaattctgtatgagaagaag |
49187285 |
T |
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| Q |
155 |
gcagaggcagaagcacagaaagcatcgg |
182 |
Q |
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||||||||||||||||||||||| |||| |
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| T |
49187284 |
gcagaggcagaagcacagaaagcgtcgg |
49187257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 55 - 177
Target Start/End: Complemental strand, 49202364 - 49202242
Alignment:
| Q |
55 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
154 |
Q |
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|||| ||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||| |
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| T |
49202364 |
ttttcggtgattcaaactctggatggtgtaggtacaagaagcaaactgggagctgtacaagaagcagaaagaggctgaagcaattctgtatgagaagaag |
49202265 |
T |
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| Q |
155 |
gcagaggcagaagcacagaaagc |
177 |
Q |
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||||||||||||||||||||||| |
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| T |
49202264 |
gcagaggcagaagcacagaaagc |
49202242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 49191075 - 49190951
Alignment:
| Q |
55 |
tttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaag |
154 |
Q |
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|||||||||||| ||| | |||||||| ||||| |||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||| |
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| T |
49191075 |
tttttggtgattgaaattctggatggtataggtacaagaagcaaactgggagctgtacaagaaacaaaaggaggcagaagcaattctgtatgagaagaag |
49190976 |
T |
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| Q |
155 |
gcagaggcagaagcacagaaagcat |
179 |
Q |
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||||||||||||||||||||||||| |
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| T |
49190975 |
gcagaggcagaagcacagaaagcat |
49190951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 49211874 - 49211769
Alignment:
| Q |
74 |
tggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
173 |
Q |
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|||||| ||||||| ||||| || |||||||| | ||||| ||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
49211874 |
tggatgctgtaggtacaagaggctaactgggaattatacaagaaacaaaaggaggcagaagcaattctgtttgagaagaaggcagaggcagaagcacaaa |
49211775 |
T |
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| Q |
174 |
aagcat |
179 |
Q |
| |
|
|||||| |
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| T |
49211774 |
aagcat |
49211769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 49207300 - 49207195
Alignment:
| Q |
74 |
tggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaaggcagaggcagaagcacaga |
173 |
Q |
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|||||| | ||||| ||||| || |||||||| | ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| || | |
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| T |
49207300 |
tggatgctctaggtacaagaggctaactgggaattatacaagaaacaaaaagaggctgaagcaattctgtatgagaagaaggcagaggcagaagcgcaaa |
49207201 |
T |
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| Q |
174 |
aagcat |
179 |
Q |
| |
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|||||| |
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| T |
49207200 |
aagcat |
49207195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 26756361 - 26756238
Alignment:
| Q |
56 |
ttttggtgattaaaactttggatggtgtaggtgcaagaagcaaactgggagctgtacaaaaaacagaaagaggcagaagcaattctgtatgagaagaagg |
155 |
Q |
| |
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||||||||||| ||| | ||||| ||| ||| ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
26756361 |
ttttggtgattcaaattctggatagtgcaggcacaagaggcaaactgggagctgtacaagaaacaaaaagaggcagaagcaattctgtatgagaagaaga |
26756262 |
T |
|
| Q |
156 |
cagaggcagaagcacagaaagcat |
179 |
Q |
| |
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|||||||||||||||||| ||||| |
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| T |
26756261 |
cagaggcagaagcacagatagcat |
26756238 |
T |
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