View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1256_low_6 (Length: 460)
Name: NF1256_low_6
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 95 - 452
Target Start/End: Complemental strand, 46929787 - 46929430
Alignment:
| Q |
95 |
atttctgaatagatctctgttgcttcacaattagtttcctggattctttagaagaaggaaatggccgtttagctggtttttctctatagtgctttcttgg |
194 |
Q |
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| T |
46929787 |
atttctgaatagatctctgttgcttcacaattggtttcctggattctttagaagaaggaaatggccgtttagctggtttttctctatagtgctttcttgg |
46929688 |
T |
|
| Q |
195 |
cctactttgctggtaaggcctgaataacctttgcttgttggcaattgaaagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatctt |
294 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46929687 |
cctactttgttggtaaggcctgaataacctttgcttgttggcaattgaaagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatctt |
46929588 |
T |
|
| Q |
295 |
ctattttgccgctgaccaatgtcttggctgtgacgcctttcccggttttgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggag |
394 |
Q |
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| T |
46929587 |
ctattttgctgctgaccaatgtcttggctgtgacgcctttcccggttttgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggag |
46929488 |
T |
|
| Q |
395 |
gactattgacctccctgcgtcttctcagatggtgacgtagatctaagtcagaataatc |
452 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
46929487 |
gactattgacctccctgcgtcttctcagatggtgacgtagatctaagtcagagtaatc |
46929430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 95 - 452
Target Start/End: Complemental strand, 47166992 - 47166635
Alignment:
| Q |
95 |
atttctgaatagatctctgttgcttcacaattagtttcctggattctttagaagaaggaaatggccgtttagctggtttttctctatagtgctttcttgg |
194 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
47166992 |
atttctgaatagatctctgttgcttcacaattggtttcctggattctttagaagatggaaatggccatttagctggtttttctctatagtgctttcttgg |
47166893 |
T |
|
| Q |
195 |
cctactttgctggtaaggcctgaataacctttgcttgttggcaattgaaagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatctt |
294 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47166892 |
cctactttgctggtaaggcctgaataaccttcgcttgttggcaattgaaagatcttcaacttctctgattgaactaaatcctacttgtgatgttaatctt |
47166793 |
T |
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| Q |
295 |
ctattttgccgctgaccaatgtcttggctgtgacgcctttcccggttttgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggag |
394 |
Q |
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|||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47166792 |
ctattttgccgctgaccaatgtcttgcctttgatgcctttcccggttttgaaccatcaaagaagacgactcatgtcttcttaagagacctgtgtcaggag |
47166693 |
T |
|
| Q |
395 |
gactattgacctccctgcgtcttctcagatggtgacgtagatctaagtcagaataatc |
452 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
47166692 |
gactattgacctccctgtgtcttctcagatggtgacgtagatctaagtcagagtaatc |
47166635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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