View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1256_low_7 (Length: 450)

Name: NF1256_low_7
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1256_low_7
NF1256_low_7
[»] chr1 (9 HSPs)
chr1 (95-442)||(48585836-48586188)
chr1 (95-181)||(48640409-48640495)
chr1 (94-152)||(48662042-48662100)
chr1 (97-149)||(48629349-48629401)
chr1 (100-152)||(48667637-48667689)
chr1 (94-145)||(48617776-48617827)
chr1 (360-415)||(48589927-48589986)
chr1 (360-415)||(48595011-48595070)
chr1 (360-415)||(48599622-48599681)
[»] chr8 (1 HSPs)
chr8 (106-183)||(25892445-25892522)
[»] chr3 (1 HSPs)
chr3 (94-152)||(19665125-19665183)


Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 95 - 442
Target Start/End: Original strand, 48585836 - 48586188
Alignment:
Q  95 actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattat 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48585836 actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcatttttctttttattat 48585935  T
Q  195 ttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgt---- 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  48585936 ttattgagtgattttcttcttcaaagttggagatacctatagcaagagaatacttgctctcttatattggaagaaagacttcctcttcccttgtgtcaca 48586035  T
Q  291 -cacaggtttgacaacattctaataaattaataataatatttcgtctttgtcatttgttttggcaaattgtattttttccttgtcatatttaatgcaaaa 389  Q
     ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48586036 gcacaggtttgacaacattctaataaattaataataatattttgtctttgtcatttgttttggcaaattgtattttttccttgtcatatttaatgcaaaa 48586135  T
Q  390 acgataatgaaattaattatatttgtggactacattttaccacacttcatctc 442  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48586136 acgataatgaaattaattatatttgtggactacattttaccacacttcatctc 48586188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 95 - 181
Target Start/End: Original strand, 48640409 - 48640495
Alignment:
Q  95 actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48640409 actttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattt 48640495  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 48662042 - 48662100
Alignment:
Q  94 cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag 152  Q
    ||||||||||||| || |||| |||||||||||||||||||||||||||| ||||||||    
T  48662042 cactttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag 48662100  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 48629349 - 48629401
Alignment:
Q  97 tttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaag 149  Q
    |||||||||| || |||| |||||||||||||||||||||||||||| |||||    
T  48629349 tttcctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaag 48629401  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 48667637 - 48667689
Alignment:
Q  100 cctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag 152  Q
    ||||||| || |||| |||||||||||||||||||||||||||| ||||||||    
T  48667637 cctagtctaagaagagggtttatgtgtccttgtgctggaaaagaaacaaggag 48667689  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Complemental strand, 48617827 - 48617776
Alignment:
Q  94 cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagaga 145  Q
    |||||| |||||| || |||| ||||||||||||||||||||||| ||||||    
T  48617827 cactttgctagtctaagaagagggtttatgtgtccttgtgctggataagaga 48617776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 48589927 - 48589986
Alignment:
Q  360 tattttttccttgtcat----atttaatgcaaaaacgataatgaaattaattatatttgt 415  Q
    |||||||||||||||||    ||||| |||||||||| ||||||||||||| ||||||||    
T  48589927 tattttttccttgtcattgctatttactgcaaaaacggtaatgaaattaatcatatttgt 48589986  T

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Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 48595011 - 48595070
Alignment:
Q  360 tattttttccttgtcat----atttaatgcaaaaacgataatgaaattaattatatttgt 415  Q
    |||||||||||||||||    ||||| |||||||||| ||||||||||||| ||||||||    
T  48595011 tattttttccttgtcattgctatttactgcaaaaacggtaatgaaattaatcatatttgt 48595070  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 415
Target Start/End: Original strand, 48599622 - 48599681
Alignment:
Q  360 tattttttccttgtcat----atttaatgcaaaaacgataatgaaattaattatatttgt 415  Q
    |||||||||||||||||    ||||| |||||||||| ||||||||||||| ||||||||    
T  48599622 tattttttccttgtcattgctatttactgcaaaaacggtaatgaaattaatcatatttgt 48599681  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 25892522 - 25892445
Alignment:
Q  106 ccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggagaagcttaatgggatcttcgtatgtcattttt 183  Q
    |||| ||||||||||| ||||| |||   |||||||||||||||||| |||||||||||||||| || || |||||||    
T  25892522 ccaagaagatggtttaggtgtcgttgaaatggaaaagagacaaggaggagcttaatgggatctttgtttgccattttt 25892445  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 19665183 - 19665125
Alignment:
Q  94 cactttcctagtccaacaagatggtttatgtgtccttgtgctggaaaagagacaaggag 152  Q
    |||||| |||||| || |||| ||||||||||||||||||||||| | |||| ||||||    
T  19665183 cactttgctagtctaagaagagggtttatgtgtccttgtgctggatatgagataaggag 19665125  T

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