View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1256_low_9 (Length: 407)
Name: NF1256_low_9
Description: NF1256
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1256_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 102 - 407
Target Start/End: Complemental strand, 48482592 - 48482287
Alignment:
| Q |
102 |
taaacaaggtacaccaaccaacaaatatgaaaaaagagtaaagagtttgagagaaaatgcagatattaccatgagagctctttcagtttgcattacctca |
201 |
Q |
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| T |
48482592 |
taaacaaggtacaccaaccaacaaatatgaaaaaagagtaaggagtttgagagaaaatgcagatattaccatgagagctctttcagtttgcattacctca |
48482493 |
T |
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| Q |
202 |
gacactccatgtggaagctttttgttgctgctaaatcctatgacaaccccaaacaacataacttcttggccagtctcattagttgttgattccaagcatg |
301 |
Q |
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| T |
48482492 |
gacactccatgtggaagctttttgttgctgctaaatcctatgacaaccccaaacaacataacttcttggccagtctcattagttgttgattccaagcatg |
48482393 |
T |
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| Q |
302 |
agtcagacgaggagtgaggggaagcgaaggattgtgtagcttctgattgtgtatcttttgtagcttctggttgttgcaaatttgcattggcagctctagt |
401 |
Q |
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| T |
48482392 |
agtcagacgaggagtgaggggaagcgaaggattgtgtagcttctgattgtgtatcttttgtagcttctgtttgttgcaaatttgcattggcagctctagt |
48482293 |
T |
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| Q |
402 |
cttttt |
407 |
Q |
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| T |
48482292 |
cttttt |
48482287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 195 - 361
Target Start/End: Complemental strand, 17326023 - 17325857
Alignment:
| Q |
195 |
tacctcagacactccatgtggaagctttttgttgctgctaaatcctatgacaaccccaaacaacataacttcttggccagtctcattagttgttgattcc |
294 |
Q |
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| T |
17326023 |
tacctcagacacttcatgtggaagctttttgttgctgctaaatcctatgacaaccccaaacaacataacttcttgaccagtctcattagttgttgattcc |
17325924 |
T |
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| Q |
295 |
aagcatgagtcagacgaggagtgaggggaagcgaaggattgtgtagcttctgattgtgtatcttttg |
361 |
Q |
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| T |
17325923 |
aagcatgagtcagacgaggagttaggggaagcgcaggattgtgtaacttctgattgtgtatcatttg |
17325857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 195 - 361
Target Start/End: Original strand, 17325302 - 17325468
Alignment:
| Q |
195 |
tacctcagacactccatgtggaagctttttgttgctgctaaatcctatgacaaccccaaacaacataacttcttggccagtctcattagttgttgattcc |
294 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| | |||| | |||||||||||||||| |||||||||||||||||||||||| |
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| T |
17325302 |
taccttagacactccatgtggaagctttatgttgctgctaaatcctatggcgacccaagacaacataacttcttgaccagtctcattagttgttgattcc |
17325401 |
T |
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| Q |
295 |
aagcatgagtcagacgaggagtgaggggaagcgaaggattgtgtagcttctgattgtgtatcttttg |
361 |
Q |
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| T |
17325402 |
aagcatgagtcagacgaggagtgaggggaagcgaaggattgtgtaacttctgactgtgtatcttttg |
17325468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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