View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1257-Insertion-10 (Length: 859)
Name: NF1257-Insertion-10
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-10 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
| [»] scaffold1636 (1 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 769; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 769; E-Value: 0
Query Start/End: Original strand, 12 - 859
Target Start/End: Original strand, 9938015 - 9938861
Alignment:
| Q |
12 |
gtcccaaaccaataccattaggccaacccaagtggatttataatcggaatatttaaaaactcaaagtccatgtgttttgacattaaattattgtaatttc |
111 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9938015 |
gtcccaaaccaataccattagaccaacccaagtggatttataatcggaatatttaaaaactcaaagtccatgtgttttgacattaaattattgtaatttc |
9938114 |
T |
|
| Q |
112 |
cgtttcaaaactttttgaattttaaaatagtccaaacaaaagtaacatgtttcatattataaatctgaaatatatataagtaacactcagaaattaccag |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9938115 |
cgtttcaaaactttttgaattttaaaatagtccaaacaaaagtaacatgtttcatattataaatctgaaatatgtataagtaacactcagaaattaccag |
9938214 |
T |
|
| Q |
212 |
ttcgatgatcaccgtcaaacatgctcatttcagaacattagcttatactcaaactgaatcagatatagacctcatagg-ttcgatatctgctggagcgag |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
9938215 |
ttcgatgatcaccgtcaaacatgctcatttcagaacattagcttatactcagactgaatcagatatggacctcataggtttcgatatctgctggagcgag |
9938314 |
T |
|
| Q |
311 |
tgttgtgttatgtaaaagtgtattctcattattgaatcatggtttgatacaagggtcctatatatagcaaactgagatacacaacaaactgagttacttg |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
9938315 |
tgttgtgttatgtaaaagtgtattctcattattgaattatggtttgatacaaagctcctatatatagcaaactgag-tacacaacaaactgagttacttg |
9938413 |
T |
|
| Q |
411 |
agagctaagtaacttccacaactaacttctaactaacttgtaacaagcatatcctaacaatcactctcctaaactgaaccttatgacaaacaaatttagt |
510 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938414 |
agagctaagtaacttccacaactaacttctaactaacttgtaacaagcatatcctaacaattactctcctaaactgaaccttatgacaaacaaatttagt |
9938513 |
T |
|
| Q |
511 |
ttacaaacatatatcacaaagaattaagacatttcacagatgcctagtttctccctcaatttgtaaaaggtttccagcttcaaaggccaagtcataatat |
610 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9938514 |
ttacagacatatatcacaaagaattaagacatttcacagatgcctagtttctccctcaatttgcaaaaggtttccagcttcaaaagccaagtcataatat |
9938613 |
T |
|
| Q |
611 |
ctgcaatctgttcttgagtactctcaaccactccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcac |
710 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938614 |
ctgcaatctgttcctgagtactctc-accactccttcttctgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcac |
9938712 |
T |
|
| Q |
711 |
tgggtttttagacagtttgatagaggaactattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgtcttagttgcttata |
810 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9938713 |
tgggtttttagacagtttgatagaggaactattatcacatagtataactgtgcactcaatatggtaacaaagttgagtctggatgccttagttgcttata |
9938812 |
T |
|
| Q |
811 |
ggcgtgctgaaaatgatgtatgtaactttcttggtcgaccattgagttg |
859 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9938813 |
ggcgtgctgaaaatgatgtatgtaactttcttggtcgaccattgagttg |
9938861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 679 - 749
Target Start/End: Original strand, 40609865 - 40609935
Alignment:
| Q |
679 |
acatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
749 |
Q |
| |
|
|||||||||||||||||||| |||||||| ||||| || ||||| || || || || || ||||||||||| |
|
|
| T |
40609865 |
acatctatatgtttgcatctaccatgcatgactggattcttagatagctttattgatgagctattatcaca |
40609935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 749
Target Start/End: Original strand, 17536300 - 17536385
Alignment:
| Q |
664 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
749 |
Q |
| |
|
||||| || |||| ||||||||| ||||| | ||||||||| | |||||||| || || |||||||||| |||||||||||||| |
|
|
| T |
17536300 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
17536385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 53
Target Start/End: Complemental strand, 18897203 - 18897162
Alignment:
| Q |
12 |
gtcccaaaccaataccattaggccaacccaagtggatttata |
53 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||| |||||| |
|
|
| T |
18897203 |
gtcccaaaccaacaccactaggccaacccaagtgggtttata |
18897162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 4e-25; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 316 - 438
Target Start/End: Complemental strand, 30288366 - 30288244
Alignment:
| Q |
316 |
tgttatgtaaaagtgtattctcattattgaatcatggtttgatacaagggtcctatatatagcaaactgagatacacaac-aaactgagttacttgagag |
414 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||| || ||||||||||||||| || |
|
|
| T |
30288366 |
tgttaggtaaaaatttattctcattattgaat-atggtttggtacaagactgctatatatagcaaactgagatacactacaaaactgagttacttgcaag |
30288268 |
T |
|
| Q |
415 |
ctaagtaacttccacaactaactt |
438 |
Q |
| |
|
|||||||||||| | ||||||||| |
|
|
| T |
30288267 |
ctaagtaacttctaaaactaactt |
30288244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 20952188 - 20952225
Alignment:
| Q |
12 |
gtcccaaaccaataccattaggccaacccaagtggatt |
49 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
20952188 |
gtcccaaaccaataccatcaggtcaacccaagtggatt |
20952225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 664 - 749
Target Start/End: Original strand, 45825234 - 45825319
Alignment:
| Q |
664 |
agaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
749 |
Q |
| |
|
||||| || |||| ||||||||| ||||| | ||||||||| | |||||||| || || |||||||||| |||||||||||||| |
|
|
| T |
45825234 |
agaaaatgatatcgcacatctatgtgtttacttctcccatgtaaaactgggttcttggagagtttgatagttgaactattatcaca |
45825319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 632 - 749
Target Start/End: Original strand, 30967099 - 30967216
Alignment:
| Q |
632 |
tctcaaccactccttcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgat |
731 |
Q |
| |
|
||||||| | ||||| |||||||||||| ||||||||||||||||| |||||||||||||| || ||||||||| || || ||||| | |||||| || |
|
|
| T |
30967099 |
tctcaactattccttattttgtaagatccctgagaaagtggtatctaacatctatatgtttacacttcccatgcaatacaggatttttgggcagtttaat |
30967198 |
T |
|
| Q |
732 |
agaggaactattatcaca |
749 |
Q |
| |
|
||| |||||||||||||| |
|
|
| T |
30967199 |
agatgaactattatcaca |
30967216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 674 - 749
Target Start/End: Complemental strand, 14178910 - 14178835
Alignment:
| Q |
674 |
atctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattatcaca |
749 |
Q |
| |
|
||||||||||||| || |||||||| |||||||||| ||||| |||||| || |||||||||||||||||||| |
|
|
| T |
14178910 |
atctcacatctatgtgcttgcatcttacatgcatcacagggttcgtagacaactttatagaggaactattatcaca |
14178835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 26078087 - 26078124
Alignment:
| Q |
9 |
caagtcccaaaccaataccattaggccaacccaagtgg |
46 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
26078087 |
caagtcccaaaccaataccactaggccaacccaagtgg |
26078124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 646 - 749
Target Start/End: Complemental strand, 42971937 - 42971834
Alignment:
| Q |
646 |
tcttttgtaagatctctgagaaagtggtatctcacatctatatgtttgcatctcccatgcatcactgggtttttagacagtttgatagaggaactattat |
745 |
Q |
| |
|
||||| ||||| || || ||||| |||||||| ||||| || |||||||||||||||||||| | || ||||| ||||| || || || |||||||||| |
|
|
| T |
42971937 |
tctttagtaaggtcccttagaaaatggtatctaacatcaatgtgtttgcatctcccatgcatgataggattttttgacagcttaatggaagaactattat |
42971838 |
T |
|
| Q |
746 |
caca |
749 |
Q |
| |
|
|||| |
|
|
| T |
42971837 |
caca |
42971834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 33962824 - 33962861
Alignment:
| Q |
13 |
tcccaaaccaataccattaggccaacccaagtggattt |
50 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33962824 |
tcccaaaccaatatcattaggccaacccaagtggattt |
33962861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 29503308 - 29503268
Alignment:
| Q |
12 |
gtcccaaaccaataccattaggccaacccaagtggatttat |
52 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
29503308 |
gtcccaaaccaataccactaggccaacccaagtgggtttat |
29503268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 46
Target Start/End: Original strand, 16918618 - 16918651
Alignment:
| Q |
13 |
tcccaaaccaataccattaggccaacccaagtgg |
46 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
16918618 |
tcccaaaccaataccactaggccaacccaagtgg |
16918651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 15497072 - 15497115
Alignment:
| Q |
8 |
tcaagtcccaaaccaataccattaggccaacccaagtggattta |
51 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
15497072 |
tcaagttccaaaccaatatcattaggccaacccaagtgggttta |
15497115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 459924 - 459886
Alignment:
| Q |
8 |
tcaagtcccaaaccaataccattaggccaacccaagtgg |
46 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
459924 |
tcaaatcccaaaccaataccattaggccaaccaaagtgg |
459886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 676 - 722
Target Start/End: Complemental strand, 47144776 - 47144730
Alignment:
| Q |
676 |
ctcacatctatatgtttgcatctcccatgcatcactgggtttttaga |
722 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||| || ||||| |
|
|
| T |
47144776 |
ctcacatctatatgcttgcatctcccatgcataactggattcttaga |
47144730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 31794300 - 31794337
Alignment:
| Q |
9 |
caagtcccaaaccaataccattaggccaacccaagtgg |
46 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
31794300 |
caagtcccaagccaataccactaggccaacccaagtgg |
31794337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 45235415 - 45235452
Alignment:
| Q |
9 |
caagtcccaaaccaataccattaggccaacccaagtgg |
46 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
45235415 |
caagtcccaaaccaataccatcagaccaacccaagtgg |
45235452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1636 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold1636
Description:
Target: scaffold1636; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 646 - 706
Target Start/End: Complemental strand, 671 - 610
Alignment:
| Q |
646 |
tcttttgtaagatctctgagaaa-gtggtatctcacatctatatgtttgcatctcccatgca |
706 |
Q |
| |
|
|||||||||||||| || | ||| ||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
671 |
tcttttgtaagatccctcaaaaaagtgatacctcacatctatatgtttgcatcttccatgca |
610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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