View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-11 (Length: 410)
Name: NF1257-Insertion-11
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 11836056 - 11836400
Alignment:
| Q |
8 |
ttggaacacttcttttctgcggttcaaaattgcatatgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagcttttctcatt |
107 |
Q |
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| T |
11836056 |
ttggaagacttcttttctacggttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagaccataagaggtcagggttagcttttttcatt |
11836155 |
T |
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| Q |
108 |
gcagctatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaatttttt |
207 |
Q |
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| T |
11836156 |
gcaactatgaactcaatatttccatgcttagctgctttcaatattgcatcgtatgctgaagcctctctcagttcagattccttaaattcttgaatttttt |
11836255 |
T |
|
| Q |
208 |
gggacaagcaattcaatatttcaagcactagacggtgcgtcactttctgatcgtatannnnnnnnatcgctggtcatcgtagaattggagagagggaagt |
307 |
Q |
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| T |
11836256 |
gggacaagcaattcaatatttcaagcactagacgatgcatcattttctgatcgtatatttcttttatcgctggtcatcatagaattggagagagggaatt |
11836355 |
T |
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| Q |
308 |
aattagtgatcaactcaatatattcaaattaatacaacaacactga |
353 |
Q |
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| T |
11836356 |
aattagtgatcaactcaatat-ttttaattaatacaacaacactga |
11836400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 8 - 352
Target Start/End: Original strand, 11791808 - 11792152
Alignment:
| Q |
8 |
ttggaacacttcttttctgcggttcaaaattgcatatgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagcttttctcatt |
107 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
11791808 |
ttggaacacttcttttctacggttcaaaattgcatgtgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagctttcctcatt |
11791907 |
T |
|
| Q |
108 |
gcagctatgaactcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaatttttt |
207 |
Q |
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||| ||||||||||||| ||||||||||||||||||| ||||| |||| | ||||||| ||||| ||||||||||||| |||||| |||||||||||| |
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| T |
11791908 |
gcatctatgaactcaatatttccatgcttagctgcttgtaacatggcatcgtatgctgaagcctctctcagttcagattccttaaattcttgaatttttt |
11792007 |
T |
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| Q |
208 |
gggacaagcaattcaatatttcaagcactagacggtgcgtcactttctgatcgtatannnnnnnnatcgctggtcatcgtagaattggagagagggaagt |
307 |
Q |
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| T |
11792008 |
tgtacaagcaattcaatatttcaagcactagactgtgggtcattttctgatcgtatatttcttttattactggtgatcatagaattggagagagggaatt |
11792107 |
T |
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| Q |
308 |
aattagtgatcaactcaatatattcaaattaatacaacaacactg |
352 |
Q |
| |
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||||||| |||| |||||||| |||| |||||||||||||| |
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| T |
11792108 |
gattagtgctcaagtcaatataagttaattgatacaacaacactg |
11792152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 11760591 - 11760816
Alignment:
| Q |
19 |
cttttctgcggttcaaaattgcatatgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagcttttctcattgcagctatgaa |
118 |
Q |
| |
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||||||| |||||||||||||||| |||||||||||||||| ||||||||||||| |||||||| | ||||||||||||||| ||||||||| ||||||| |
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| T |
11760591 |
cttttctacggttcaaaattgcatgtgaaaatatgcctcttctatttttatcaatggcccataacaagtcagggttagctttcctcattgcatctatgaa |
11760690 |
T |
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| Q |
119 |
ctcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttgggacaagcaa |
218 |
Q |
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| T |
11760691 |
ctcaatatttccattcttagctgcctgcaacattgcatccaatgctgaagcctctctcggttcagattccttaaattcttgaattttttcggaccagcaa |
11760790 |
T |
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| Q |
219 |
ttcaatatttcaagcactagacggtg |
244 |
Q |
| |
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| T |
11760791 |
tctaatatttcaaggactcgacggtg |
11760816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 11883732 - 11883971
Alignment:
| Q |
19 |
cttttctgcggttcaaaattgcatatgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagcttttctcattgcagctatgaa |
118 |
Q |
| |
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||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| ||| | |||||||||||| |||| || |
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| T |
11883732 |
cttttctacggttcaaaattgcatgtgaaaatacgcctcttttatttttatcaatggcccataagaggtcaggattaccctttctcattgcatctataaa |
11883831 |
T |
|
| Q |
119 |
ctcaatgtttccatgcttagctgcttccaacattgcattgattgctgaaacctctatcagttcagattcattaaatccttgaattttttgggacaagcaa |
218 |
Q |
| |
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| T |
11883832 |
ctcaataatcccatgctttgctgcttgcaacattgcatcgtaagccgaagcctctctaagttctgattccttaaactcttgaattctttggtgcaagcaa |
11883931 |
T |
|
| Q |
219 |
ttcaatatttcaagcactagacggtgcgtcactttctgat |
258 |
Q |
| |
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||||||||||||| ||||||||| |||| |||||||| |
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| T |
11883932 |
ctcaatatttcaagagctagacggtaggtcattttctgat |
11883971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 11747438 - 11747301
Alignment:
| Q |
19 |
cttttctgcggttcaaaattgcatatgaaaatatgcctcttttatttttatcaatagcccataagaggtcagggttagcttttctcattgcagctatgaa |
118 |
Q |
| |
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||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
11747438 |
cttttctacggttcaaaactgcatgcgaaaatacgcctcttttatttttatcaatagtccataagaggtcagggttaacttttctcattgcatctatgaa |
11747339 |
T |
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| Q |
119 |
ctcaatgtttccatgcttagctgcttccaacattgcat |
156 |
Q |
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|||||| ||||||||||| ||||||| ||||||||||| |
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| T |
11747338 |
ctcaatatttccatgctttgctgcttgcaacattgcat |
11747301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 409
Target Start/End: Original strand, 11836487 - 11836539
Alignment:
| Q |
357 |
attaaaacccatgaattcctacttctctacgacttagatggtaaaagcactta |
409 |
Q |
| |
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|||||||||| ||||||| |||||||||| |||||||||||||||||||||| |
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| T |
11836487 |
attaaaacccgtgaattcaaacttctctacaacttagatggtaaaagcactta |
11836539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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