View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-12 (Length: 807)
Name: NF1257-Insertion-12
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 719; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 8 - 807
Target Start/End: Complemental strand, 42448179 - 42447379
Alignment:
| Q |
8 |
ttttgatcattccagaacagtagccccccaatcatcatttttggagtgagtgaagagtgacgactttgagcagtttgatgttctatgcgagggcaaagat |
107 |
Q |
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| T |
42448179 |
ttttgaacattccagaacagtagccccccaatcatcatttttggagtgagtgaagagtgacgactttgagcagtttgatgttctatgcgagggcaaagat |
42448080 |
T |
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| Q |
108 |
tatgctcaaagaaagcttttgcttgtatgcgactcacgatgagttttcagttcgcagagaactgagttgtaaaaaaggtgacgctcgtgacggattcgtg |
207 |
Q |
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| T |
42448079 |
tatgctcaaagaaagcttttgcttgtatgcgactcacgatgacttttcagttcgcagagaactgaattgtaaaaaaggtgatgctcgtgacggattcgtg |
42447980 |
T |
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| Q |
208 |
gttcgtttggaacctcgagcatcaaaggtcctagaaagtgtagcgctcat-tggtacttgtagtttccgaaacttcaagttttgggacgaattagttcga |
306 |
Q |
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| T |
42447979 |
gttcgtttggaacctcgagcatcaaaggtcctagaaagtgtagtgctcatatggtacttgtagtttccgaaacttcaagttttgggacgaattagttcga |
42447880 |
T |
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| Q |
307 |
actcttggtgagccgtagttagctagcaattttaagaatatgttgctcgaagagagtctatagttcgtgatgaacctcttagggtattgatgctcgcgag |
406 |
Q |
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| T |
42447879 |
actcttggtgagccgtagttagctagcaattttaagaatatgttgctcgaagagagtctatagttcgtgatgaacctcttagggtattgatgctcgcgag |
42447780 |
T |
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| Q |
407 |
gaactcataatttgtgaaaatgacttttaagattgtggtgctcgcaagagagctttaatggttcgtgaagaacgtgagggaatgactttgacttgcaagg |
506 |
Q |
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| T |
42447779 |
gaactcataatttgtgaaaatgacttttaagattgtggtgctcgcaagagagctttaatggttcgtgaagaacgtgagggaatgactttgacttgcaagg |
42447680 |
T |
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| Q |
507 |
agctataagcaggtgttgtgcatgtgaaaaacttgctagtttagaaaggactttcgctcgctgggagccactgggattaac-agagattagtgctcgtat |
605 |
Q |
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| T |
42447679 |
agctataagcaggtgttgtgcatgtgaaaaacttgctagttcagaaaggactttcgctcgctgggagctactgggattaacgagagaatagtgctcgtat |
42447580 |
T |
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| Q |
606 |
gggcatctaattcttgtggaacttctggtgttttgatgatttacatgttatatttcttcccgatatgttttgtcattatttttagtttgttccaagtttg |
705 |
Q |
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| T |
42447579 |
gggcatctaattcttgtggaacttctggtgttttgatgatttacatgttatatttctt-ccgaaatgttttgtcattatttttagtttgttccaagtttg |
42447481 |
T |
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| Q |
706 |
tattccatgtgttttcccgaatgtttgtaagtcactttatcaataccatataaagtaagggggttttcgtaacagttacctgcaa-ttttggtagtaaca |
804 |
Q |
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| T |
42447480 |
tattccatgtgttttccgaaatgtttgtaagtcactttatcaataccatataaagtaa-ggggttttcgtaacagttacctgcaatttttggtagtaaca |
42447382 |
T |
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| Q |
805 |
aat |
807 |
Q |
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| T |
42447381 |
aat |
42447379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 54 - 160
Target Start/End: Complemental strand, 18035733 - 18035627
Alignment:
| Q |
54 |
tgagtgaagagtgacgactttgagcagtttgatgttctatgcgagggcaaagattatgctcaaagaaagcttttgcttgtatgcgactcacgatgagttt |
153 |
Q |
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| T |
18035733 |
tgagtgaagagtgttgactttgagaagtttgatgttttatgcgagggaaaagatcattcccatgggaagcttttagttgtatgcgactcacgaggagttt |
18035634 |
T |
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| Q |
154 |
tcagttc |
160 |
Q |
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| T |
18035633 |
ttagttc |
18035627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 12694275 - 12694319
Alignment:
| Q |
58 |
tgaagagtgacgactttgagcagtttgatgttctatgcgagggca |
102 |
Q |
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| T |
12694275 |
tgaagagtgatgacttctagcagtttgatgttctatgcgagggca |
12694319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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