View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-13 (Length: 441)
Name: NF1257-Insertion-13
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-13 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 2022512 - 2022098
Alignment:
| Q |
15 |
cttatgattcaagaaacttaaaggggtgcggccaagtaggaagtaaaagctaaaaagatgaacataagtgctcaagggtttttgctagaaagcttagcca |
114 |
Q |
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| T |
2022512 |
cttatgattcaagaaacttaaaggggtgcggccaagtaggaagtaaaagctaaaaagatgaacataaatgctcaagtgtttttgctagaaagcttagcca |
2022413 |
T |
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| Q |
115 |
agattaaatccaaagttgattgcatagcagccctagcagcttctccttgttcatgccttttgttgattagatcaatgatgttctgagtttgttgcacaaa |
214 |
Q |
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| T |
2022412 |
agattaaatccaaatttgattgcatagcagccctagcagcttctccttgttcatgccttttgttgattagatcaatgaagttccgagtttgttgcacaaa |
2022313 |
T |
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| Q |
215 |
ctgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtttcagctgatgtttcagttgttgttgcagaagcatattgaaacca |
314 |
Q |
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| T |
2022312 |
ctgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtt------------tcagttgttgttgcagaagcatattgaaacca |
2022225 |
T |
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| Q |
315 |
ggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatgaattgacgttggtctgttgggtattaatagtgttttgagatc |
414 |
Q |
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| T |
2022224 |
ggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatgaaatgatgttggtctgttgggtattaacactgttttgagatc |
2022125 |
T |
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| Q |
415 |
tattctccattgttagcattttcgtag |
441 |
Q |
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| T |
2022124 |
tattctccattgttagcattttcgtag |
2022098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 274 - 409
Target Start/End: Complemental strand, 2042602 - 2042467
Alignment:
| Q |
274 |
gctgatgtttcagttgttgttgcagaagcatattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatga |
373 |
Q |
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| T |
2042602 |
gctgatgtttcagttgttgctgctgaagcatattggaacctggctgatgggtatttagatttggttggattacatttaccccaccttgtgacggtaatga |
2042503 |
T |
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| Q |
374 |
attgacgttggtctgttgggtattaatagtgttttg |
409 |
Q |
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| T |
2042502 |
attgatgttggtatgttgggtattaacagtgttttg |
2042467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 441
Target Start/End: Complemental strand, 2019529 - 2019490
Alignment:
| Q |
402 |
gtgttttgagatctattctccattgttagcattttcgtag |
441 |
Q |
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| T |
2019529 |
gtgttttgagatttaatctccattgttagcattttcgtag |
2019490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 437
Target Start/End: Complemental strand, 2036258 - 2036223
Alignment:
| Q |
402 |
gtgttttgagatctattctccattgttagcattttc |
437 |
Q |
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| T |
2036258 |
gtgttttgagatttattctccattgttagcattttc |
2036223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 104 - 437
Target Start/End: Original strand, 48204351 - 48204657
Alignment:
| Q |
104 |
aagcttagccaagattaaatccaaagttgattgcatagcagccctagcagcttctccttgttcatgccttttgttgattagatcaatgatgttctgagtt |
203 |
Q |
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| T |
48204351 |
aagcttagccaagattaaatccaaagttgattgcatagcaactc---------ctccttgt-catgccttttgttggttagatcaatgacgttctgagct |
48204440 |
T |
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| Q |
204 |
tgttgcacaaactgatcaaaggcttctcttgtgacaaactgagatgatggaagttcctgctgatgtttcagctgatgtttcagttgttgttgcagaagca |
303 |
Q |
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| T |
48204441 |
tgttccacaaactgatcaaaggcttctcttgtgacaaactgaaatgatggaagttcctgctgatgtttcag------------ttgttgttgttgaagca |
48204528 |
T |
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| Q |
304 |
tattgaaaccaggctgatgggtatttagatttggttgcattacatttaccccaccttgtgacggtaatgaattgacgttggtctgttgggtattaatagt |
403 |
Q |
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| T |
48204529 |
tattgaaacctggctgatgggtatttagatttggttggattac-----ccccaccttgtgacggtaatgaattgatgttggtctgttggggattaacggt |
48204623 |
T |
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| Q |
404 |
gttttgagatctattctccattgttagcattttc |
437 |
Q |
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| T |
48204624 |
gttttgagatttattctccattgttagcattttc |
48204657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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