View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1257-Insertion-4 (Length: 860)

Name: NF1257-Insertion-4
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1257-Insertion-4
NF1257-Insertion-4
[»] chr4 (1 HSPs)
chr4 (8-860)||(40853447-40854303)


Alignment Details
Target: chr4 (Bit Score: 722; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 722; E-Value: 0
Query Start/End: Original strand, 8 - 860
Target Start/End: Original strand, 40853447 - 40854303
Alignment:
Q  8 atgtctagtggtggtgcatgtgtaagtgtgagtgattcatagtctctgtatttggagcactgactgattggaaggcgtgtgt--caccgtcacatgtcgg 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  40853447 atgtctagtggtggtgcatgtgtaagtgtgagtgattcatagtctctgtagttggagcactgactgattggaaggcgtgtgtgtcaccgtcacatgtcgg 40853546  T
Q  106 tgttcgacac-gacacctgtcacacactggcgaatttgattacattcaatcatgctgttttctaaaattattgccggtgatgcgtcatcatagttaatta 204  Q
    |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40853547 tgttcgacactgacacctgtcacgcactggcgaatttgattacattcaatcatgctgttttctaaaattattgccggtgatgcgtcatcatagttaatta 40853646  T
Q  205 ttaatattcatattctgtttttgttgctgagaattgagaaaggtatggtagaagagaagggcatagtgaaagatgttttgaacaacgaaagnnnnnnnnt 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||        |    
T  40853647 ttaatattcatattctgtttttgttgctgagaattgagaaaggtatggtagaagagaagggtatagtgaaagatgttttgaacaatgaaagaaaaaaa-t 40853745  T
Q  305 cgcttgggtttgnnnnnnnn-atgtcttatattttgaagtgatgttcagggattgtgacgcggaggccgttggtactgcaactgcacagaatagaggaag 403  Q
    |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  40853746 cgcttgggtttttttttttttatgtcttatattttgaagtgatgttcagggattgtgacgcggaggccgttggtactgcaactgcacagaatagaggaaa 40853845  T
Q  404 ggttacaagagtatgctgagtttctgcacttgccgaagaaacggtttactgatttctgtatgtcttttttcatgtaatgcatgtttggttttgaatttac 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40853846 ggttacaagagtatgctgagtttctgcacttgccgaagaaacggtttactgatttctgtatgtcttttttcatgtaatgcatgtttggttttgaatttac 40853945  T
Q  504 attggaaggttgtggaaatcagagttccttgaccacacttcaccgtacaaaccctgcatgcatttcttttctttcctttttatcaaaaagcggaaatttc 603  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  40853946 attggaaggttgtggaaatcagagttccttgaccaaacttcaccgtacaaaccctgcatgcatttcttttctttcttttttatcaaaaagcggaaatttc 40854045  T
Q  604 aaaatgtgtaattcgattcgtcaatatgtcagtctcacaagaattaattatttttctgcattgtatggtattgttagcctatattggccatcctgcattt 703  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40854046 aaaatgtgtaattcgactcgtcaatatgtcagtctcacaagaattaattatttttctgcattgtatggtattgttagcctatattggccatcctgcattt 40854145  T
Q  704 cccatggcgttgtctggtaatttaaaaacataaaacgtcctgatattttttgggattattgtgatgccatgaggaatcatgtttcttttattgacagtgt 803  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  40854146 cccatggcgttgtctggtaatttaaaaacataaaacgtcctgatattttttgggattattgtgatgacatgaggaatcatgtttcttttattgacagtgt 40854245  T
Q  804 aagatattttactaagg-taacttgtgcaactttgaatttagtggactcaattcttag 860  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||    
T  40854246 aagatattttactaaggttaacttgtacaactttgattttagtggactcaattcttag 40854303  T

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