View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-6 (Length: 668)
Name: NF1257-Insertion-6
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 614; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 7 - 668
Target Start/End: Complemental strand, 30342709 - 30342049
Alignment:
| Q |
7 |
attttggtgtcccattgttcttaggagaaatccccggattgaaagaagtttatttaagtgggaatttactttctggtaaaattccagaaatatggaaaaa |
106 |
Q |
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| T |
30342709 |
attttggtgtccctttgttcttaggagaaatccccggattgaaagaagtttatttaagtgggaatttactttctggtaaaattccagaaatatggaaaaa |
30342610 |
T |
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| Q |
107 |
tcttggtgctgttgaaaaaattggattttctaaaatggggttggttggtaaaattccagtttcaatgggggtttatttgaagaatttatcttatcttgga |
206 |
Q |
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| T |
30342609 |
tcttggtgctgttgaaaaaattggattttctaaaatggggttggttggtaaaattccagtttcaatgggggtttatttgaagaatttatcttatcttgga |
30342510 |
T |
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| Q |
207 |
cttgataacaataagcttgatgggtctgttcctaaggaatttgggcttttggaatttgctaatgagatcaatttggagaacaacaatttgagtggtagaa |
306 |
Q |
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| T |
30342509 |
cttgataacaataagcttgatgggtctgttcctaaggaatttgggcttttggaatttgctaatgagatcaatttggagaacaacaatttgagtggtagaa |
30342410 |
T |
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| Q |
307 |
tcactttctcaactagagttggacagaagttaaagttggcaggaaatgtagggctgtgtttgggaaacaataatagtagctgttctgaaaatggaggtag |
406 |
Q |
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| T |
30342409 |
tcactttctcaactagagttggacagaagttaaagttggcaggaaatgtagggctgtgtttgggaaacaataatagtagctgttctgaaaatggaggtag |
30342310 |
T |
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| Q |
407 |
tttgggtcaacttaatccctgcaaaataacagatgttgtttctgatagtgaggtccttttcaatggggcttctttgatgctttttgatcctattaagctg |
506 |
Q |
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| T |
30342309 |
tttgggtcaacttaatccctgcaaaataacagatgttgtttctgatagtgaagtccttttcaatggggcttctttgatgctttttgatcctattaagctg |
30342210 |
T |
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| Q |
507 |
gttttggttatgttgtttgttttcatgggattttgagttgggaagggtgaagatatgttttgtcnnnnnnnngccagaaaagaaatactcctatctgttt |
606 |
Q |
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| T |
30342209 |
gttttggttatgttgtttgttttcatgggattttgaattgggaagggtgaagatatgttttgtcttttttttaccagaaaagaaatactcctatctgttt |
30342110 |
T |
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| Q |
607 |
actcttactaggaaaagggtttttgaattcaacaaatgtaaatggaaatgatagtgatggta |
668 |
Q |
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| T |
30342109 |
actcttactaggaaaaggg-ttttgaattcaacaaatgtaaatggaaatgatagtgatggta |
30342049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 266 - 353
Target Start/End: Original strand, 30333362 - 30333449
Alignment:
| Q |
266 |
taatgagatcaatttggagaacaacaatttgagtggtagaatcactttctcaactagagttggacagaagttaaagttggcaggaaat |
353 |
Q |
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| T |
30333362 |
taatgagatcaatttggagaacaacaatttgagtggtataatcactttctcagccagagttggacagaagttgaagttggcaggaaat |
30333449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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