View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-7 (Length: 695)
Name: NF1257-Insertion-7
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-7 |
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Alignment Details
Target: chr5 (Bit Score: 622; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 622; E-Value: 0
Query Start/End: Original strand, 7 - 688
Target Start/End: Complemental strand, 35273578 - 35272894
Alignment:
| Q |
7 |
aatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggtaggtgtggcgaaagttcca |
106 |
Q |
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| T |
35273578 |
aatcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggtaggtgtggcgaaagttcca |
35273479 |
T |
|
| Q |
107 |
aacaaaattgtggatgtccttgatcggaagtacctgagacggcattggggatgttaggtcaagtggcgggaatatcaattttgcgcattcagaaggtacg |
206 |
Q |
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| T |
35273478 |
aacaaaattgtggatgtccttgatcggaagtacctgagacggcattggggatgttaggtcaagtggcgggaatatcaatttcgcgcattcagaaggtacg |
35273379 |
T |
|
| Q |
207 |
gagaatgcaccgccattattagcatccgactgggtgagagtcttgccagagaaaacaagcctatcaccaccatgttcgttttcacgaacctcaggctcct |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35273378 |
gagaatgcaccgccattattagcatccgactgggtgagagtcttgccagagaaaacaagcctatcaccaccatgttcattttcacgaacctcaggctcct |
35273279 |
T |
|
| Q |
307 |
gaggttcgtgaacactgtcattggtgatgggagttaggatcagttttgcaaagacttcgtcagtttgaagattagctaagagatcaacgttggagacgac |
406 |
Q |
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| T |
35273278 |
gaggttcgtgaacactgtcattggtgatgggagttaggatcagttttgcaaagacttcatcagtttgaagatcagctaagagatcaacgtcggagacgac |
35273179 |
T |
|
| Q |
407 |
gcgcggaatgatgggacggtaactattgataagggagagtgcttcagtgttaagggaagggcaggcatgttccaagtgacctagtggaaagtaaaaaaca |
506 |
Q |
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| T |
35273178 |
gcacggaatgatgggacggtaactattgataagggagagtgcttcagtgttaggggaagggcaggcatgttccaagtgacctagtggaaagtaaaaaact |
35273079 |
T |
|
| Q |
507 |
tgagaatttagtttcggaattttgaacgatggtccggccaagcactgccagatttctcgatcaacacgtttgggttcctgaggatccat--gggaagcga |
604 |
Q |
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| T |
35273078 |
tgagaatttagtttcggaattttgaacgatggtccggccaagcactgccagatttctcgatcaacgcgtttgggttcctgaggatccatgggggaagcga |
35272979 |
T |
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| Q |
605 |
taaagctattggaagagaagaaaagatttgttatgaagagagcgccagaaaatatgattaggg-ttttaaaacaggtataaataa |
688 |
Q |
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| T |
35272978 |
taaagctattggaagagaagaaaagatttgttatgaagagagcgccagaaaatatgattagggtttttcaaacaagtataaataa |
35272894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 301
Target Start/End: Complemental strand, 17914471 - 17914332
Alignment:
| Q |
162 |
aggtcaagtggcgggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatccgactgggtgagagtcttgccagagaaaa |
261 |
Q |
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||||||||||||||||| || |||||||||||||| ||| || |||||||||||||| ||||||||||| ||| | || ||||| ||||||||| ||| |
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| T |
17914471 |
aggtcaagtggcgggaagattaattttgcgcattcgctaggcactgagaatgcaccgccgttattagcatcagacggagttagagttttgccagaggaaa |
17914372 |
T |
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| Q |
262 |
caagcctatcaccaccatgttcgttttcacgaacctcagg |
301 |
Q |
| |
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||| | || | || |||||| || ||||||||||||||| |
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| T |
17914371 |
caaccttaaccccgtcatgttggtcttcacgaacctcagg |
17914332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 162 - 251
Target Start/End: Original strand, 17976688 - 17976777
Alignment:
| Q |
162 |
aggtcaagtggcgggaatatcaattttgcgcattcagaaggtacggagaatgcaccgccattattagcatccgactgggtgagagtcttg |
251 |
Q |
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| T |
17976688 |
aggtcaagtggcgggaagattaatttcgcgcattccactggcacagagaatgcaccgccattgttagcatcagatggggtgagagtcttg |
17976777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 99
Target Start/End: Complemental strand, 17914624 - 17914534
Alignment:
| Q |
9 |
tcgccgccaataattttctttgtgtcaacgaacttactccatttagtggtgattaggtgtcgcttgggagacccacggtaggtgtggcgaa |
99 |
Q |
| |
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||||||||||| | |||||| |||||| |||| |||||| || |||||||| ||||||||| ||||| |||||||||| |||||||| |
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| T |
17914624 |
tcgccgccaatcagtttcttctcgtcaacaaactcactccaattggtggtgatcaggtgtcgcaagggagtcccacggtagacgtggcgaa |
17914534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 505
Target Start/End: Original strand, 25443816 - 25443866
Alignment:
| Q |
455 |
gttaagggaagggcaggcatgttccaagtgacctagtggaaagtaaaaaac |
505 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |||||| |||| |
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| T |
25443816 |
gttaggggaagggcaggcatgttccaagtgaccatgtgggaagtaataaac |
25443866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 200 - 352
Target Start/End: Complemental strand, 8823388 - 8823239
Alignment:
| Q |
200 |
aggtacggagaatgcaccgccattattagcatccgactgggtgagagtcttgccagagaaaacaagcctatcaccaccatgttcgttttcacgaacctca |
299 |
Q |
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|||||||||||||||||| || ||||||||||| || |||| |||||||| |||||| |||||| | |||||| | |||||| ||| ||||||||| |
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| T |
8823388 |
aggtacggagaatgcaccaccgttattagcatcagatagggttagagtctttccagaggaaacaaactcatcacctttaggttcgtcttcccgaacctca |
8823289 |
T |
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| Q |
300 |
ggctcctgaggttcgtgaacactgtcattggtgatgggagttaggatcagttt |
352 |
Q |
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| | ||||||||||||||| ||| ||||||||||||||||| |||||| |
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| T |
8823288 |
g---caggaggttcgtgaacacaaccatcggtgatgggagttaggagcagttt |
8823239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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