View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1257-Insertion-8 (Length: 670)
Name: NF1257-Insertion-8
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-8 |
 | |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 7 - 670
Target Start/End: Complemental strand, 26457032 - 26456369
Alignment:
| Q |
7 |
actttagtctaatatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcata |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
26457032 |
actttagtctaatatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaattctgcaaattgcgcata |
26456933 |
T |
|
| Q |
107 |
tgaaattacattttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattca |
206 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456932 |
tgaaattacattttcattgtaaacctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattca |
26456833 |
T |
|
| Q |
207 |
aaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcacgagcgaataaatttt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26456832 |
aaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcacgagcgaataaatttt |
26456733 |
T |
|
| Q |
307 |
tccaacagccttttcaaagtattttcaaataacaactttagcatacttacggttccgatgactctaagatacactaacaagcgtctggaccagagcagct |
406 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26456732 |
tctaacagccttttcaaagtattttcaaataacaactttagcatatttacggttccgatgactctaagatacactaacaagcgtctggaccagagcagct |
26456633 |
T |
|
| Q |
407 |
ttaattgctccctataaataactaaaaacaggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggact |
506 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26456632 |
ttaattgctccctagaaataactaaaaacaggcaaataaaataacaactaaagttgtcacttattctagcatccctaacagttaagacttatcatggact |
26456533 |
T |
|
| Q |
507 |
ctaatgtattttctcacggtaatatttaccgagaagataaggggataaagtattgctattgatcacaataaacatgtataaagaataaagtaagaaaaat |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26456532 |
ctaatgtattttctcacggtaatatttaccgagaagataaggggataaagtattgctactgatcacaataaacatgtataaagaataaagtaagaaaaat |
26456433 |
T |
|
| Q |
607 |
tatagataaagagaatgaaagtgaaaacaacctttgaatgcattaaagtcattagtttccgaat |
670 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
26456432 |
tatagataaagagaatgaaagtgaaaacaacctttgaatgcattaaagtcattagttcccgaat |
26456369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 2e-82; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 29675712 - 29675480
Alignment:
| Q |
18 |
atatcaatgtgaacaatcatttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacat |
117 |
Q |
| |
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||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||||||| |
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| T |
29675712 |
atatccatgtgaagaatcacttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaattctgcgaatagcgcatatgaaattacat |
29675613 |
T |
|
| Q |
118 |
tttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaa----aaca |
213 |
Q |
| |
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|||||||||||| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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|
| T |
29675612 |
tttcattgtaaaactggaatttcggtgttgacgttggtataaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaaataaaa |
29675513 |
T |
|
| Q |
214 |
aaatatcagagaaataaaacataacaagactaa |
246 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |
|
|
| T |
29675512 |
atatatcagagaaataaaacataacaagactaa |
29675480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 456 - 670
Target Start/End: Complemental strand, 29675464 - 29675251
Alignment:
| Q |
456 |
aaagttgtcacttattctagcatccctaacagttaagacttatcatggactctaatgtattttctcacggtaatatttaccgagaagataaggggataaa |
555 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| || |
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|
| T |
29675464 |
aaagctgtcacttatgctagcatccctaacagt-aagacctatcatggactctaatgtattttctcacggtaatattcaccgagaagattaggggattaa |
29675366 |
T |
|
| Q |
556 |
gtattgctattgatcacaataaacatgtataaagaataaagtaagaaaaattatagataaagagaatgaaagtgaaaacaacctttgaatgcattaaagt |
655 |
Q |
| |
|
|||||| ||||| |||||||||| | || ||||||||||||||||| || || |||||||| |||||||| |||||||||||||||| ||||| ||| |
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|
| T |
29675365 |
atattgccattgaacacaataaacgcatgtatagaataaagtaagaaaagttgtacataaagaggatgaaagtaaaaacaacctttgaattcattagagt |
29675266 |
T |
|
| Q |
656 |
cattagtttccgaat |
670 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
29675265 |
cattagttcccgaat |
29675251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 36 - 291
Target Start/End: Original strand, 11493504 - 11493758
Alignment:
| Q |
36 |
atttgcttatatgtacacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctgga |
135 |
Q |
| |
|
||||||||| |||||||||||||||||||||| | | || | ||||||||| || | ||| | | ||||||||| |||| || |||||| | ||| |
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|
| T |
11493504 |
atttgcttaaatgtacacacctgttgttttaactcgttaagccttttggctaattcttcgaatagcgtatatgaaatcccattgtccctgtaaaaccgga |
11493603 |
T |
|
| Q |
136 |
attttgtggttgaagttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacat |
235 |
Q |
| |
|
|||||| ||| || ||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
11493604 |
attttggggtagatgttggtatgaactgtgagatgacagcatcacatacacaggtataaaccttcaattcaaaaacaaaaatattagagaaataaaacat |
11493703 |
T |
|
| Q |
236 |
aacaagactaaacagtaatgttgagttgtacttcaaaacaaaagagtattactcac |
291 |
Q |
| |
|
|||||| |||| |||| | ||||||| |||||||||||||||||| ||||||| |
|
|
| T |
11493704 |
ggcaagac-caacactaatatcgagttgtgcttcaaaacaaaagagtaatactcac |
11493758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 630 - 670
Target Start/End: Original strand, 11494250 - 11494290
Alignment:
| Q |
630 |
aaaacaacctttgaatgcattaaagtcattagtttccgaat |
670 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
11494250 |
aaaacaacctttgaatgcattagagtcattagttcccgaat |
11494290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 165 - 319
Target Start/End: Original strand, 21530315 - 21530469
Alignment:
| Q |
165 |
gagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgt |
264 |
Q |
| |
|
|||||| || |||| |||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||| | ||| ||||| ||| ||| | |
|
|
| T |
21530315 |
gagatggcaacatctctcacacaagtataaacattcaattcaaaaaa-aaaatattagagaaataaaacataacaaaatcaaaaggtaatattgggttat |
21530413 |
T |
|
| Q |
265 |
acttcaaaacaaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
319 |
Q |
| |
|
|||||||||||||| ||||||||| ||| | ||||||||||||| |||| ||||| |
|
|
| T |
21530414 |
acttcaaaacaaaatgagtattacacacaaaggaataaatttttctaacaaccttt |
21530469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 50 - 308
Target Start/End: Original strand, 21527550 - 21527807
Alignment:
| Q |
50 |
acacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaa |
149 |
Q |
| |
|
|||||||||||||||||| || | || ||||||||| ||| || ||||| | |||||||| ||| |||| || || ||| ||||||| || ||| |
|
|
| T |
21527550 |
acacacctgttgttttaagcttccgattttattggccaattcttcaaatagctcatatgaacttaactttttctttaaatactgaaattttggggatgat |
21527649 |
T |
|
| Q |
150 |
gttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaaca |
249 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| |||||||||||| | ||||| |||||| || ||| |||||||||||||||||||| || ||| |
|
|
| T |
21527650 |
gttggtagaaattgtgagatggcagcatcactcgcacatgtataaatttgcaattaaaaaaa--aattattagagaaataaaacataacaaaaccaaaag |
21527747 |
T |
|
| Q |
250 |
gtaatgttgagttgtacttcaaaacaaaa-gagtattactcacgagcgaataaatttttc |
308 |
Q |
| |
|
||||| ||| ||| |||||||||||||| ||||||||| ||| | |||| |||||||| |
|
|
| T |
21527748 |
gtaatattggattgcacttcaaaacaaaatgagtattacacacaaaggaatgaatttttc |
21527807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 21531571 - 21531452
Alignment:
| Q |
77 |
tttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagca |
176 |
Q |
| |
|
||||||||||||| || ||||| | | |||||| |||||||||| ||| || | |||||||| | ||||| |||||||| |||||||||||||||||| |
|
|
| T |
21531571 |
tttattggctaattcttcaaatagctcgtatgaacttacattttccttgaaataccggaattttatagttgatgttggtataaatttggagatgacagca |
21531472 |
T |
|
| Q |
177 |
tcactcacacatgtataaac |
196 |
Q |
| |
|
|||||| ||||||| ||||| |
|
|
| T |
21531471 |
tcactcgcacatgtctaaac |
21531452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 50 - 287
Target Start/End: Original strand, 21525201 - 21525434
Alignment:
| Q |
50 |
acacacctgttgttttaaactgctgagtttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaa |
149 |
Q |
| |
|
|||||| ||||||||||| || |||| ||||||||| ||| | | ||| | | ||||||||||||||| | || || | ||||||||| || ||| |
|
|
| T |
21525201 |
acacacatgttgttttaagcttctgattttattggccaattcctcgaatagctcgtatgaaattacatttccctttaaataccggaattttgggggtgat |
21525300 |
T |
|
| Q |
150 |
gttggtatgaatttggagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaaca |
249 |
Q |
| |
|
|||| || |||| |||||| ||||| ||||| ||||||||||||||||||||| ||||| ||| ||| ||| |||||||||||||||| || || | |
|
|
| T |
21525301 |
gttgatagaaattgtgagatggcagca-cactcgcacatgtataaaccttcaatt--aaaaaaaaattataagaaaaataaaacataacaaaaccaa--a |
21525395 |
T |
|
| Q |
250 |
gtaatgttgagttgtacttcaaaacaaaa-gagtattac |
287 |
Q |
| |
|
||||| ||| |||| |||||||||||||| ||||||||| |
|
|
| T |
21525396 |
gtaatattgggttgcacttcaaaacaaaacgagtattac |
21525434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 165 - 319
Target Start/End: Original strand, 21531780 - 21531935
Alignment:
| Q |
165 |
gagatgacagcatcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataacaagactaaacagtaatgttgagttgt |
264 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||| ||||||| |||||| | |||| |||||||||||| ||||||| | ||| ||||| ||| ||| |
|
|
| T |
21531780 |
gagatggcagcatctctcacacaagtataaacattcaattaaaaaaaatatatattagagaaataaaatataacaaaatcaaaaggtaatattgggttac |
21531879 |
T |
|
| Q |
265 |
acttcaaaacaaaa-gagtattactcacgagcgaataaatttttccaacagccttt |
319 |
Q |
| |
|
||||||||||||| ||||||||| ||| | ||||||||||||||| || ||||| |
|
|
| T |
21531880 |
tcttcaaaacaaaatgagtattacacacaaaggaataaatttttccagcaaccttt |
21531935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 237
Target Start/End: Complemental strand, 21527456 - 21527299
Alignment:
| Q |
77 |
tttattggctaatgctgcaaattgtgcatatgaaattacattttcattgtaaagctggaattttgtggttgaagttggtatgaatttggagatgacagca |
176 |
Q |
| |
|
||||||||||||| || | ||| | |||||||| |||||||||| |||||| | ||||||| |||||| |||||||| |||| |||||| ||| | |
|
|
| T |
21527456 |
tttattggctaattcttcgaatagctcatatgaacttacattttccttgtaataccaaaattttggggttgatgttggtataaattgtgagatggcagta |
21527357 |
T |
|
| Q |
177 |
tcactcacacatgtataaaccttcaattcaaaaaacaaaatatcagagaaataaaacataa |
237 |
Q |
| |
|
|||||| ||||||| |||||||||| | ||||| || ||||| |||||| ||||||||| |
|
|
| T |
21527356 |
tcactcgcacatgtctaaaccttcatt---aaaaaaaacatatccgagaaagaaaacataa |
21527299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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