View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1257-Insertion-9 (Length: 782)
Name: NF1257-Insertion-9
Description: NF1257
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1257-Insertion-9 |
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Alignment Details
Target: chr2 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 7 - 444
Target Start/End: Complemental strand, 36545423 - 36545006
Alignment:
| Q |
7 |
acaaagaagatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacaatacttc |
106 |
Q |
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| T |
36545423 |
acaaagaagatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacagtacttc |
36545324 |
T |
|
| Q |
107 |
ttgatcttttcaaataggatgattaagattgactaatgagatagataaaactaagcaaaatcagaagaattatggattgttttgtgttagtttgatcgcc |
206 |
Q |
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| T |
36545323 |
ttgatcttttcaaataggatgattaaaattgactaatgagatagataaaactaagcaaaatcagaagaattatggattgttttgtgttagtttgatcgcc |
36545224 |
T |
|
| Q |
207 |
aaatgcatgtaaaatgttactcnnnnnnnaattcgaataatggtttaaataattattcatatcgagagtgaattaaataaaatatccgtgagatagttct |
306 |
Q |
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| T |
36545223 |
aaatgcatgtaaaatgttactctttttttaattcgaataatggtttaaataattattcatattgagagtgaattaaatataatgtctgtgagatagttct |
36545124 |
T |
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| Q |
307 |
ttaaattctaggtgtgtgtttatttaaggttttgaaaaataacattatgatatgnnnnnnnnnnnnnnaaacaagacgttttaacttgtgggatgcacga |
406 |
Q |
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| T |
36545123 |
ttaa-------------------ttaaggttttgaaaaataacattatgatacgttttttatttttttaaacaagacgttttgtcttgtgggatgcacga |
36545043 |
T |
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| Q |
407 |
atctattaaataaaacacaacaagacttgataagatac |
444 |
Q |
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| T |
36545042 |
atctattaaa-aaaacacaacaagacttgataagatac |
36545006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 442 - 782
Target Start/End: Complemental strand, 36544715 - 36544376
Alignment:
| Q |
442 |
tactcgtgacatttttnnnnnnntagaattgctttgttcactgatgagttttgtttatcaaatagnnnnnnntgttgaaataatagagtaatttattttt |
541 |
Q |
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| T |
36544715 |
tactcgtgacatttttttaaaaatagcattgctttgttcaccgatgagttttgtttatcaaatagaaaaaa-tattgaaaaaatagagtaatttattttt |
36544617 |
T |
|
| Q |
542 |
ggtgagccgtttatttttt-cattttgtgaacaacattacaagtttggaactaaaaagaaattaaataaaagcaatcagtcattttaaatactgaaaaat |
640 |
Q |
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| T |
36544616 |
ggtgagccgtttatttttttcattttgtgaacaacattgcaagtttggaactaaaa-gaaactatataaaagcaatcagtcattttaaatactgaaaaat |
36544518 |
T |
|
| Q |
641 |
gatattgaagcgtatatgattgtgaaataaaattttgaactggatgtgatggtgagccatttatttttgtgaacaatatcattttgtttatcaaatagat |
740 |
Q |
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| T |
36544517 |
gatattgaagcgtatatgattgtgaaataaaattttgaactggatgtgatggtgagccatttaattttgtgaacaatatcattttgtttatcaaatagat |
36544418 |
T |
|
| Q |
741 |
gtaggattattaatttgtgtttcatgtgattgtatttgtgag |
782 |
Q |
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| T |
36544417 |
gtaggattattaatttgtgtttcctgtgattgtatttgtgag |
36544376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 36550406 - 36550297
Alignment:
| Q |
7 |
acaaagaagatggtgcttgttggttgtcaaaaatgttacatgtatgttctttcatcagaggttgagccaaagtgtccccagtgcaacaccacaatacttc |
106 |
Q |
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|||||| ||||||| ||||||||||||| |||||||||||||||||| | |||||||| ||||| |||||||||||| ||||||| || ||| | ||| |
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| T |
36550406 |
acaaaggagatggttcttgttggttgtcctaaatgttacatgtatgttatgtcatcagaagttgaaccaaagtgtcccaagtgcaagactacagtttttc |
36550307 |
T |
|
| Q |
107 |
ttgatctttt |
116 |
Q |
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|||||||||| |
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| T |
36550306 |
ttgatctttt |
36550297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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