View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12570_high_1 (Length: 622)

Name: NF12570_high_1
Description: NF12570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12570_high_1
NF12570_high_1
[»] chr1 (7 HSPs)
chr1 (301-604)||(246150-246449)
chr1 (386-600)||(251944-252152)
chr1 (299-544)||(230944-231190)
chr1 (422-556)||(8814781-8814913)
chr1 (213-303)||(230451-230540)
chr1 (222-294)||(233926-233998)
chr1 (68-139)||(230310-230381)
[»] chr3 (8 HSPs)
chr3 (368-581)||(9339962-9340166)
chr3 (425-591)||(9495475-9495640)
chr3 (299-385)||(8060919-8060998)
chr3 (207-281)||(9352192-9352266)
chr3 (514-567)||(9335294-9335345)
chr3 (495-544)||(9401917-9401966)
chr3 (495-544)||(9432410-9432459)
chr3 (425-501)||(9627160-9627236)
[»] chr6 (5 HSPs)
chr6 (504-582)||(7046438-7046514)
chr6 (499-567)||(9159841-9159907)
chr6 (498-544)||(7040933-7040979)
chr6 (506-567)||(9170528-9170587)
chr6 (518-598)||(213660-213738)
[»] chr5 (1 HSPs)
chr5 (79-130)||(18570256-18570307)


Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-141; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 301 - 604
Target Start/End: Original strand, 246150 - 246449
Alignment:
Q  301 agtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaactg 400  Q
    |||||||||||||||||||||||    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  246150 agtttcaactttacaggaccata----ataatacaagtaatcaacatcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaactg 246245  T
Q  401 ttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  246246 ttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggttcattgcaaagcatatag 246345  T
Q  501 tccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatggtgatgtctt 600  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  246346 tccgcaaaaggaacaacaaaagaagataatcaaacccatcaacacatggttaaatctagtttagaaaatccataatgataacttgccatggtgatgtctt 246445  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 386 - 600
Target Start/End: Complemental strand, 252152 - 251944
Alignment:
Q  386 gagttaaagaaactgttagaatgtgtatccggcaaccccaa-ttccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggttt 484  Q
    ||||| ||||||||||||||| |  ||||||||||||| || ||||||  ||||||||| ||||||||| ||||||||||||||||||||||||||||||    
T  252152 gagttgaagaaactgttagaacgcttatccggcaacccaaaattccacctcattttccagcatcttttcatatgaatatgtaattaggattcaggggttt 252053  T
Q  485 gttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataactt 584  Q
     || ||||| |||||||| ||||||||||||| ||||||||||||||||||       | ||||||||||||| |||| |||||||||||||||||||||    
T  252052 ctttcaaagcatatagtctgcaaaaggaacaacaaaagaagataatcaaac-------ctcattgttaaatctggttttgaaaattcataatgataactt 251960  T
Q  585 gtcatggtgatgtctt 600  Q
    | ||||||||||||||    
T  251959 gccatggtgatgtctt 251944  T

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Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 299 - 544
Target Start/End: Original strand, 230944 - 231190
Alignment:
Q  299 taagtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttcttacttaagagagttaaagaaac 398  Q
    |||||||||||||||||||||||||    ||||| |||||| ||||| |||||||||||||||| ||| | ||||||| |   | |||||||  ||||||    
T  230944 taagtttcaactttacaggaccata----ataatgcaagtagtcaacatcaaatcaaaataacataacacgactttctaaaacaggagagttgcagaaac 231039  T
Q  399 tgttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatat 498  Q
     |||  || |  |||||||||| || ||||||||  | ||||||| ||||||||| ||||||| ||||||||||||| ||| |   ||||||||  ||||    
T  231040 cgttcaaacgcttatccggcaaaccaaattccacctcgttttccagcatcttttcatatgaatgtgtaattaggatttaggagaccgttgcaaaacatat 231139  T
Q  499 agtccgcaaaaggaac-----aataaaagaagataatcaaacccatcaaca 544  Q
    |||| |||||||||||     ||||||||||||||||||||||||||||||    
T  231140 agtctgcaaaaggaacaataaaataaaagaagataatcaaacccatcaaca 231190  T

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Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 422 - 556
Target Start/End: Complemental strand, 8814913 - 8814781
Alignment:
Q  422 cccaattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaataaaa 521  Q
    ||||||||||   ||||||||| ||||||||| ||||||||||||||||||| | | | ||||||  ||||| |||||| | |||| |||||||||||||    
T  8814913 cccaattccatctcattttccagcatcttttcatatgaatatgtaattaggacttaagagtttgtcacaaagcatatagcctgcaagaggaacaataaaa 8814814  T
Q  522 gaagataatcaaacccatcaacacattgttaaatc 556  Q
    |||| ||| |||||||||||  |||||||||||||    
T  8814813 gaagctaaacaaacccatca--acattgttaaatc 8814781  T

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Target: chr1; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 213 - 303
Target Start/End: Original strand, 230451 - 230540
Alignment:
Q  213 tggtggtgctgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaattccgtttgattagtcttgtaagt 303  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||||| |||||| || |||||||| |||||||||||| ||||||||    
T  230451 tggtggtggtgtctagttccatcttattatatatctttaa-ttttgaaatataaattgatggttaaatttcgtttgattagttttgtaagt 230540  T

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Target: chr1; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 294
Target Start/End: Original strand, 233926 - 233998
Alignment:
Q  222 tgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaattccgtttgattagt 294  Q
    ||||||||||||||||| | |||||||||||||| |||||| |||||| ||||||||||| ||||||||||||    
T  233926 tgtctagttccatcttattctatatctttaacttctgaaatataaattgatagttaaatttcgtttgattagt 233998  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 139
Target Start/End: Original strand, 230310 - 230381
Alignment:
Q  68 tggaatgcccgcccaccatgcgtttagcttcctaatttccatgtttagtttctattgggacgcgagaaaata 139  Q
    ||||||||||||| ||  |||||||||||||||  ||||||||||| |||| |||| |||||||||||||||    
T  230310 tggaatgcccgcctactgtgcgtttagcttcctgttttccatgttttgtttgtattaggacgcgagaaaata 230381  T

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Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 368 - 581
Target Start/End: Original strand, 9339962 - 9340166
Alignment:
Q  368 caactttcttacttaagagagttaaagaaactgttagaatgtgtatccggcaaccccaattccactacattttccaacatcttttcgtatgaatatgtaa 467  Q
    |||||||||||| |||||||||| || || || | |||| |  ||||| |||| || ||| | ||  ||||||||| ||||||||  |||||||||| ||    
T  9339962 caactttcttacataagagagtttaaaaatctataagaacgcttatccagcaatccaaatgcaacctcattttccagcatcttttgatatgaatatgcaa 9340061  T
Q  468 ttaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 567  Q
    ||||||       ||||||||  ||  |||||||| ||||||| |||||| |||||||||||||||||||| ||  ||||||||| ||||||||||||||    
T  9340062 ttagga-------gtttgttggtaaacatatagtctgcaaaagtaacaatgaaagaagataatcaaacccaaca--acattgttacatctagtttagaaa 9340152  T
Q  568 attcataatgataa 581  Q
     |||||||| ||||    
T  9340153 gttcataataataa 9340166  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 425 - 591
Target Start/End: Complemental strand, 9495640 - 9495475
Alignment:
Q  425 aattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagtccgcaaaaggaacaa-taaaaga 523  Q
    ||||||||  |||||| || ||||| ||| |||||| ||||||| | || | ||| ||||||||  ||  |||||||| ||||||||||||| |||||||    
T  9495640 aattccacctcattttgcagcatctcttcatatgaacatgtaatcacgaattaggagtttgttggtaaacatatagtctgcaaaaggaacaaataaaaga 9495541  T
Q  524 agataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatgg 591  Q
    |||||| |||||  | |||||  |||||||||||| || ||||| |||||||| ||||||||||||||    
T  9495540 agataaacaaacaaaccaaca--ttgttaaatctatttcagaaacttcataataataacttgtcatgg 9495475  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 299 - 385
Target Start/End: Original strand, 8060919 - 8060998
Alignment:
Q  299 taagtttcaactttacaggaccatacataataatacaagtaatcaacgtcaaatcaaaataacagaacgcaactttcttacttaaga 385  Q
    |||||||||||||||||||||||||       ||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||    
T  8060919 taagtttcaactttacaggaccata-------atacaagtagtcaacatcaaatcaaaataacagaacacaactttcttacataaga 8060998  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 207 - 281
Target Start/End: Original strand, 9352192 - 9352266
Alignment:
Q  207 caatactggtggtgctgtctagttccatcttactatatatctttaacttttgaaatgtaaattcatagttaaatt 281  Q
    |||||||||||||| |||||||||||||| || |||||||  |||||||||||||| |||| | |||||||||||    
T  9352192 caatactggtggtgatgtctagttccatcatattatatataattaacttttgaaatataaactgatagttaaatt 9352266  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 514 - 567
Target Start/End: Original strand, 9335294 - 9335345
Alignment:
Q  514 caataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 567  Q
    |||||||||||||||||||||| |||||  ||| ||||| ||||||||||||||    
T  9335294 caataaaagaagataatcaaactcatca--acaatgttacatctagtttagaaa 9335345  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 9401917 - 9401966
Alignment:
Q  495 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 544  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9401917 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9401966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 495 - 544
Target Start/End: Original strand, 9432410 - 9432459
Alignment:
Q  495 atatagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 544  Q
    |||||||| ||||||| |||||||||||||||| ||||| | ||||||||    
T  9432410 atatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaaca 9432459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 425 - 501
Target Start/End: Complemental strand, 9627236 - 9627160
Alignment:
Q  425 aattccactacattttccaacatcttttcgtatgaatatgtaattaggattcaggggtttgttgcaaagtatatagt 501  Q
    ||||||||| ||||||| | ||| ||||| || |||||||||||||||| | ||| ||||||||  || ||||||||    
T  9627236 aattccacttcattttctagcatattttcatacgaatatgtaattaggaattaggagtttgttgataaatatatagt 9627160  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 504 - 582
Target Start/End: Original strand, 7046438 - 7046514
Alignment:
Q  504 gcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataac 582  Q
    ||||||| |||||||||||||||||||||| |||| ||  ||||||| | |||||||||||||| |||||||| |||||    
T  7046438 gcaaaagtaacaataaaagaagataatcaagcccagca--acattgtcatatctagtttagaaacttcataataataac 7046514  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 499 - 567
Target Start/End: Complemental strand, 9159907 - 9159841
Alignment:
Q  499 agtccgcaaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 567  Q
    |||| ||||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9159907 agtctgcaaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9159841  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 498 - 544
Target Start/End: Original strand, 7040933 - 7040979
Alignment:
Q  498 tagtccgcaaaaggaacaataaaagaagataatcaaacccatcaaca 544  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||    
T  7040933 tagtctgcaaaagtaacaataaaagaagataatcaatcccatcaaca 7040979  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 506 - 567
Target Start/End: Original strand, 9170528 - 9170587
Alignment:
Q  506 aaaaggaacaataaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaa 567  Q
    ||||| |||||||||||||||||||||| | |||||  ||||||||| ||||||||||||||    
T  9170528 aaaagtaacaataaaagaagataatcaagctcatca--acattgttacatctagtttagaaa 9170587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 518 - 598
Target Start/End: Complemental strand, 213738 - 213660
Alignment:
Q  518 aaaagaagataatcaaacccatcaacacattgttaaatctagtttagaaaattcataatgataacttgtcatggtgatgtc 598  Q
    |||||||||||  |||| |||||||||  ||||||  |  |||||||||| |||||||| |||||||||||||||||||||    
T  213738 aaaagaagatatccaaaaccatcaaca--ttgttaccttcagtttagaaacttcataataataacttgtcatggtgatgtc 213660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 18570256 - 18570307
Alignment:
Q  79 cccaccatgcgtttagcttcctaatttccatgtttagtttctattgggacgc 130  Q
    ||||||||||||||||||||||||||| |||| || |||| |||| ||||||    
T  18570256 cccaccatgcgtttagcttcctaattttcatgctttgtttgtattaggacgc 18570307  T

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