View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12570_low_2 (Length: 541)
Name: NF12570_low_2
Description: NF12570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12570_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 178; Significance: 9e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 321 - 523
Target Start/End: Original strand, 32425012 - 32425218
Alignment:
| Q |
321 |
atataatcaatgggacactgacacgcgttccattagaaatgttggtgctattgattctaaataatgtctgtgaatgg----ttggttgtgttttggttta |
416 |
Q |
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| T |
32425012 |
atatagtcaatgggacactgacacgcgttccattagaaatgttggtgctattgattctaaataatgtctgtgaatggatggttggttgtgtttgggttta |
32425111 |
T |
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| Q |
417 |
atcttttagtgtgtttgattctaaatatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagcttcgcgacaaactcgaag |
516 |
Q |
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| T |
32425112 |
atcttttagtgtgtttgattctaaatatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagcttcgcgacaaactcaaag |
32425211 |
T |
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| Q |
517 |
gtatata |
523 |
Q |
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||||||| |
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| T |
32425212 |
gtatata |
32425218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 32420453 - 32420535
Alignment:
| Q |
441 |
atatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagcttcgcgacaaactcgaaggtatata |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||||||| |
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| T |
32420453 |
atatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagctttcctacaaactgaaaggtatata |
32420535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 7e-38; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 293 - 433
Target Start/End: Original strand, 1542828 - 1542973
Alignment:
| Q |
293 |
taataatttaagaaaataagtgatttgaatataatca-atgggacactgacacgcgttccattagaaatgttggtgctattgattctaaataatgtctgt |
391 |
Q |
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| T |
1542828 |
taataatttaagaaaataatttatttgaatataatcacatgtgataccgacacacgttccatttgaaatgttggtgctattgattccaaataatatatgt |
1542927 |
T |
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| Q |
392 |
gaat----ggttggttgtgttttggtttaatcttttagtgtgtttg |
433 |
Q |
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| T |
1542928 |
gaatggaaggttggttgtgttttggtttaatcttttagtgtgtttg |
1542973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 441 - 523
Target Start/End: Original strand, 1543014 - 1543096
Alignment:
| Q |
441 |
atatattctgtttcaactagacactactttgcttttggagctctttgttctgaagagcttcgcgacaaactcgaaggtatata |
523 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||| | |||||||| |
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| T |
1543014 |
atatattctgtttcaactagacactactttgcttttggagctgtttgttctgaagagctttcctacaaactcaatggtatata |
1543096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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