View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12570_low_4 (Length: 300)
Name: NF12570_low_4
Description: NF12570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12570_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 8187745 - 8187594
Alignment:
| Q |
1 |
agaaaaaattggagtgtttcctctagttcaacaagttgcaacaaaaagatcaaatgtcaatagactctcgggtacactcgaaacaaaactgattgcttct |
100 |
Q |
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| T |
8187745 |
agaaaaaattggtgtgtttcctcaagttcaacaagttgcaacaaaaagatcaagtgtcaatagaccctcgggtacactcgaaacaaaactgattgcttct |
8187646 |
T |
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| Q |
101 |
atgattatagaagttaccc---attggttttatataaataaagttttacctg |
149 |
Q |
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| T |
8187645 |
atgattaaagaagttacccattattggttttatataaataaagttttacctg |
8187594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 8186892 - 8187023
Alignment:
| Q |
4 |
aaaaattggagtgtttcctctagttcaacaagttgcaacaaaaagatcaaatgtcaatagactctcgggtacactcgaaacaaaactgattgcttctatg |
103 |
Q |
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| T |
8186892 |
aaaaattggtgtgtttcctctatttcaacaagttgcagcaaaaatatcaagtgtcaatagaccctcaagtacactcgaaacaaaactgattgcttctatc |
8186991 |
T |
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| Q |
104 |
attatagaagttacccattggttttatataaa |
135 |
Q |
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| T |
8186992 |
actaaagaatttacccgatgattttatataaa |
8187023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 45488975 - 45489118
Alignment:
| Q |
4 |
aaaaattggagtgtttcctctagttcaacaagttgcaacaaaaagatcaaatgtcaatagactctcgggtacactcgaaacaaaactgattgcttctatg |
103 |
Q |
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| T |
45488975 |
aaaaattggtgtgtggcctctagttcatcaagttgcagcaagaagatcaagtgtcaatagaccctcgggtacactcgaaacaaaactgattggttctatc |
45489074 |
T |
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| Q |
104 |
attatagaagttacccattggttttatataaataaagttttacc |
147 |
Q |
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| T |
45489075 |
aatagagaagttacccgttcgttttatataaataaagttttacc |
45489118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 236 - 283
Target Start/End: Original strand, 30716678 - 30716725
Alignment:
| Q |
236 |
cttgtaactgtaacaccaatagcttgttgttagtcgtgccacactaat |
283 |
Q |
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| T |
30716678 |
cttgtaactgtaacaccaatatcttgttgttagtcgtgccacactaat |
30716725 |
T |
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