View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12570_low_5 (Length: 253)
Name: NF12570_low_5
Description: NF12570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12570_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-125; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 10255996 - 10256237
Alignment:
| Q |
1 |
cgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10255996 |
cgtggcgagggaggatggtgaagaagaggatgatggttatttagtgagttatgtgcatgatgagaaaaagggagagtctaagtttttggtgatggatgct |
10256095 |
T |
|
| Q |
101 |
aagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10256096 |
aagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagt |
10256195 |
T |
|
| Q |
201 |
tgtcggtgtcgtagggatgaagacatagttctcttgtctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10256196 |
tgtcggtgtcgtagggatgaagacatagttcttttgtctctg |
10256237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 10238612 - 10238406
Alignment:
| Q |
1 |
cgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgct |
100 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
10238612 |
cgtggctagggaagatggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagagtcaaggtttttggtgatggatgct |
10238513 |
T |
|
| Q |
101 |
aagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
|
|
| T |
10238512 |
aagtctccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcacgaggt |
10238413 |
T |
|
| Q |
201 |
tgtcggt |
207 |
Q |
| |
|
||||||| |
|
|
| T |
10238412 |
tgtcggt |
10238406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 10229832 - 10229616
Alignment:
| Q |
1 |
cgtggcgagggaggatggtgatgaagaggatgatggttatttagtgagttatgttcatgatgagaagaagggagagtctaagtttttggtgatggatgct |
100 |
Q |
| |
|
|||||||| ||| | |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10229832 |
cgtggcgatggaaggtggtgaggaagaggatgatggttatttagtgagttatgtgcatgatgagaagaagggagaatctaagtttttggtgatggatgcg |
10229733 |
T |
|
| Q |
101 |
aagtcgccggagtttgagattgtggcggaagtgaagttgccaaggagggtgccttatggttttcatggattgtttgtgaaagagagtgacatcaccaagt |
200 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
10229732 |
aagtcgccagagtttgagattgtggcggaggtgaagttgccgaggagggtgccctatggttttcatggattgtttgtgaagcaaagtgacataaccaagt |
10229633 |
T |
|
| Q |
201 |
tgtcggtgtcgtaggga |
217 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
10229632 |
tgtcggtgtcgtaggga |
10229616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University