View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_high_1 (Length: 478)
Name: NF12571_high_1
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Original strand, 13773815 - 13774281
Alignment:
| Q |
1 |
cgtgaggtttgagatttatctttgcttataatcatcccaattcttttgtactttactgttttagtggtagctacctatgatattgtggaacttattaaca |
100 |
Q |
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| T |
13773815 |
cgtgaggtttgagatttatctttgcttataatcatcccaattcttttgtactttactgttctagtggtagctacctatgatattgtggaacttattaaca |
13773914 |
T |
|
| Q |
101 |
ctaaatattatatgtttagatatttacaaacttcctttcaagcgcgatgattcatgcaactcgaccttttgtggtaaatgaatggattcaaacgaagatt |
200 |
Q |
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| T |
13773915 |
ctaaatattatatgtttagatatttacaaacttcctttcaagcgcgatgattcatgcaactcgaccttttgtggtaaatgaatggattcaaacgaagatt |
13774014 |
T |
|
| Q |
201 |
gaaggatatgaggtgtctggcactgttgaggtgagtcaaattgctccttttaattattgaatgttggaattatatattaaacatgtatcatgttct-ttt |
299 |
Q |
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| T |
13774015 |
gaaggatatgaggtgtctggcactgttgaggtgag---aattgctccttttaattattgaatgttggaattatatattaaacatgtatcatgttctgttt |
13774111 |
T |
|
| Q |
300 |
aaataataatttagcataaagtaatcatacaatacagtgtagtgattttgagttctctcagtaaggctatgttttcctgctatgcagcatgttggctggt |
399 |
Q |
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| T |
13774112 |
aaataataatttagcataaagtaatcatacaatacagtgtagtgattttgagttctctcagtaaggctatgttttcctgctatgcagcatgttggctggt |
13774211 |
T |
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| Q |
400 |
ggtcaccaacaattatacgaggtgaagatcgtgaagctgtacacattccaaaccacaaattcacagtgaa |
469 |
Q |
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| T |
13774212 |
ggtcaccaacaattatacgaggtgaagatcgtgaagctgtacacattccaaaccacaaattcacagtgaa |
13774281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 46098601 - 46098715
Alignment:
| Q |
118 |
agatatttacaaacttcctttcaagcgcgatgattcatgcaactcgaccttttgtggtaaatgaatggattcaaacgaagattgaaggatatgaggtgtc |
217 |
Q |
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|||||||||| |||||||||||||| ||||| ||| ||||||| || ||||| | ||||| ||||||||||| |||||||| ||||||||||| || |
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| T |
46098601 |
agatatttacgaacttcctttcaagtataatgatccatacaactcggccatttgtattgaatgagtggattcaaacaaagattgagggatatgaggtttc |
46098700 |
T |
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| Q |
218 |
tggcactgttgaggt |
232 |
Q |
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| T |
46098701 |
tggcacagttgaggt |
46098715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 118 - 208
Target Start/End: Original strand, 46129863 - 46129953
Alignment:
| Q |
118 |
agatatttacaaacttcctttcaagcgcgatgattcatgcaactcgaccttttgtggtaaatgaatggattcaaacgaagattgaaggata |
208 |
Q |
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| T |
46129863 |
agatattcacgaacttcctttcaagtgtgatgattcatgcaactcggccatttgttgtgaatgagcggattaaaacaaagattaaaggata |
46129953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 385 - 463
Target Start/End: Original strand, 46098898 - 46098976
Alignment:
| Q |
385 |
agcatgttggctggtggtcaccaacaattatacgaggtgaagatcgtgaagctgtacacattccaaaccacaaattcac |
463 |
Q |
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| T |
46098898 |
agcatgtgggctggtggtcaccaactattattagaggtgatgatcgtgaggcagttcatattcctaatcacaagttcac |
46098976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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