View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_high_8 (Length: 236)
Name: NF12571_high_8
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41876181 - 41876402
Alignment:
| Q |
1 |
taagtggtttgttcttatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaa |
100 |
Q |
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| T |
41876181 |
taagtggtttgttctcatttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcttctcgattttccaacaaaatgaaa |
41876280 |
T |
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| Q |
101 |
attgtaggcagtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatg |
200 |
Q |
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| T |
41876281 |
attgtaggcggtggtatggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatg |
41876380 |
T |
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| Q |
201 |
cagcgcaatctaaagcagctgg |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
41876381 |
cagcgcaatctaaagcagctgg |
41876402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 24817649 - 24817448
Alignment:
| Q |
18 |
tttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtat |
117 |
Q |
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| T |
24817649 |
tttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggcggcggtat |
24817550 |
T |
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| Q |
118 |
ggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagca |
217 |
Q |
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| T |
24817549 |
gatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagca |
24817450 |
T |
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| Q |
218 |
gc |
219 |
Q |
| |
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|| |
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| T |
24817449 |
gc |
24817448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 24800573 - 24800372
Alignment:
| Q |
18 |
tttttatgttaatccatcaaccaaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtat |
117 |
Q |
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| T |
24800573 |
tttttacgtcaatccatcatcaaaatgtttcacaatttgcatataatttagtatcctcttatcgattttgttacaaaatgatacttgcaggtggcggtat |
24800474 |
T |
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| Q |
118 |
ggcatcgggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagca |
217 |
Q |
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| T |
24800473 |
gatagcaggaatagcaatagctgccaaggcgattaatccggctattcgtattttggctgctgagcctaaaggagctgatgatgcagctcaatccaaagca |
24800374 |
T |
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| Q |
218 |
gc |
219 |
Q |
| |
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|| |
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| T |
24800373 |
gc |
24800372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 222
Target Start/End: Complemental strand, 40867845 - 40867664
Alignment:
| Q |
40 |
aaatgttttaaaattttcataaattttagtattctcatctcgattttccaacaaaatgaaaattgtaggcagtggtatggcatcgggagtagcattagct |
139 |
Q |
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| T |
40867845 |
aaatgtttcaaaatttgcattgattttggtatccccttcttgattttccaacaaa-tgaaaactgcaggaggtggtttgatatcaggagtagcattggct |
40867747 |
T |
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| Q |
140 |
gccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatgatgcagcgcaatctaaagcagctgg |
222 |
Q |
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| T |
40867746 |
gccaagtctatcaacccggccattcgtattttggctgctgaacctaaaggggccgatgacgcagcacaatctaaagcagctgg |
40867664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 213
Target Start/End: Complemental strand, 9736090 - 9736000
Alignment:
| Q |
125 |
ggagtagcattagctgccaaggccattaacccgtctattcggattttggctgctgagccaaaaggagctgatg--atgcagcgcaatctaa |
213 |
Q |
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| T |
9736090 |
ggagtagcaatagctgccaaagctattaactcggctatttgtattttggttgctgagcataaaggagctgatgatatgcatcgcaatctaa |
9736000 |
T |
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