View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_low_1 (Length: 734)
Name: NF12571_low_1
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_1 |
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| [»] scaffold0212 (1 HSPs) |
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Alignment Details
Target: scaffold0212 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 14 - 726
Target Start/End: Original strand, 11785 - 12497
Alignment:
| Q |
14 |
gttcactggctcgcgggctccttaccttaggggatatttctcactatacaaagtacacgtagttcagcagcataaaaggaaacaacagagatgagcacac |
113 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11785 |
gttcactggctcgcggactccttaccttaggggatatttctcactatacaaagtacacgtagttcagcagcataaaaggaaacaacagagatgagcacac |
11884 |
T |
|
| Q |
114 |
atctcgatctcagaaagcctctcttaatgggcttagattcctctacacctttctcgcttcaacttaggcgagagaaagaccagccaaacgggttccggtc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11885 |
atctcgatctcagaaagcctctcttaatgggcttagattcctctacacctttctcgcttcaacttaggcgagagaaagaccagccaaacgggttccggtc |
11984 |
T |
|
| Q |
214 |
gtgagttagcaatcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11985 |
gtgagttagcaatcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccagataagctccaggtttagttgtagttccgcg |
12084 |
T |
|
| Q |
314 |
gatagaggagctgcttcgagcattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgatagg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12085 |
gatagaggagctgcttcgagcattggtatgaaacccggaatattttatttgaaatcgcgatgagttaaagaaacccacccggaattcagtccatgatagg |
12184 |
T |
|
| Q |
414 |
atagggaaagaagcttgtgcatctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggccc |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12185 |
atagggaaagaagcttgtgcatctttctattttatgtttgttgatggatctatcaaagtggtatcggagattttttcttaatggaaacttgtataggccc |
12284 |
T |
|
| Q |
514 |
ctatggctctcctaaaacccttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggct |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12285 |
ctatggctctcctaaaacccttcataagggatatggctataatgagaatatcttgctttccgcacccgctagtgcacatacactttcgtttacttgggct |
12384 |
T |
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| Q |
614 |
cgtgaggtggtgggaaatggcctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatcca |
713 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12385 |
cgtgaggtggtgggaaatggcctgatctatgcttatgctcttgtctaaggagtccgcagactcttattagactgcttgtgcctatgtctcgcgaaatcca |
12484 |
T |
|
| Q |
714 |
tgatgtccatctc |
726 |
Q |
| |
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|||||| |||||| |
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| T |
12485 |
tgatgttcatctc |
12497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 85 - 307
Target Start/End: Complemental strand, 9629037 - 9628815
Alignment:
| Q |
85 |
ataaaaggaaacaacagagatgagcacacatctcgatctcagaaagcctctcttaatgggcttagattcctctacacctttctcgcttcaacttaggcga |
184 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9629037 |
ataaaaggaaacaacagagatgagcacacatctcgatctcaacaagcctctcttaatgggcttagattcctctacacctttctcgctacaacttaggcga |
9628938 |
T |
|
| Q |
185 |
gagaaagaccagccaaacgggttccggtcgtgagttagcaatcaaaaccgactgcctggatacagaccagattttgtccatgattattaaggtaaccaga |
284 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| ||| |
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| T |
9628937 |
gagaaagaccagccaaacgggttccggtcatgagttagcaatcaaaaccgactgcctagatatagagcagattttgtccatgattattaaggtaactaga |
9628838 |
T |
|
| Q |
285 |
taagctccaggtttagttgtagt |
307 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
9628837 |
taagctccaggtttagttgtagt |
9628815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 140; Significance: 6e-73; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 268 - 467
Target Start/End: Original strand, 16576868 - 16577067
Alignment:
| Q |
268 |
ttattaaggtaaccagataagctccaggtttagttgtagttccgcggatagaggagctgcttcgagcattggtatgaaacccggaatattttatttgaaa |
367 |
Q |
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|||||||||| | |||||||||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
16576868 |
ttattaaggttatcagataagctccaggtttagttgtagtttcgtggatagaggagttgcttcgagtattggtatgaaacccgaaatattttatttgaaa |
16576967 |
T |
|
| Q |
368 |
tcgcgatgagttaaagaaacccacccggaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttatgtttgttgatggatctatc |
467 |
Q |
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||| ||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |
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| T |
16576968 |
tcgtgatgagttaaagaaatcaacccgaaattcagtccatgataggatagggaaagaagcttgtgcatctttctattttacaattgatgatggatctatc |
16577067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 107 - 202
Target Start/End: Complemental strand, 28039349 - 28039254
Alignment:
| Q |
107 |
agcacacatctcgatctcagaaagcctctcttaatgggcttagattcctctacacctttctcgcttcaacttaggcgagagaaagaccagccaaac |
202 |
Q |
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||||||||||||||||| | || |||||| |||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||| |
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| T |
28039349 |
agcacacatctcgatcttataatgcctcttttaacgggcttagattcctctacacctttcttgcttcaacttaggcgcgagaaataccaaccaaac |
28039254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 671 - 719
Target Start/End: Original strand, 21805420 - 21805468
Alignment:
| Q |
671 |
agactcttattagactgcttgtgcctatgtctcgcgaaatccatgatgt |
719 |
Q |
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|||||||||||||| || |||||||||||||| ||||||||||| |||| |
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| T |
21805420 |
agactcttattagaatgtttgtgcctatgtcttgcgaaatccataatgt |
21805468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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