View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12571_low_11 (Length: 244)
Name: NF12571_low_11
Description: NF12571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12571_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 234
Target Start/End: Original strand, 13848166 - 13848393
Alignment:
| Q |
7 |
ggagaagcagagacaattgtaagtgaaaagtttgaatcctgacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaaca |
106 |
Q |
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| T |
13848166 |
ggagaagtagagacaattgtaagggaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaaca |
13848265 |
T |
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| Q |
107 |
tgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttca |
206 |
Q |
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| T |
13848266 |
tgacagtagaagatggaggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttca |
13848365 |
T |
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| Q |
207 |
ctcatggtccctttaatttgatgtccat |
234 |
Q |
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| T |
13848366 |
ctcatggtccctttaatttgaggtccat |
13848393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 24 - 227
Target Start/End: Original strand, 34343782 - 34343982
Alignment:
| Q |
24 |
tgtaagtgaaaagtttgaatcctgacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
123 |
Q |
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| T |
34343782 |
tgtaagtgaaaagtttgaatcctcacatcaaagaggaagagggtttccaatgcaacttttaatttcacaagaataagggaacatgacagtagaagatgga |
34343881 |
T |
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| Q |
124 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttcactcatggtccctttaat |
223 |
Q |
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| T |
34343882 |
ggaattgagtgtttgaagaagatgtaaggttttgttttcccaaaaaatatgact---tagtgtaggtcatttgttgaggttcactcatggtccctttaat |
34343978 |
T |
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| Q |
224 |
ttga |
227 |
Q |
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|||| |
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| T |
34343979 |
ttga |
34343982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 225
Target Start/End: Original strand, 34823081 - 34823153
Alignment:
| Q |
152 |
gttttgttttcccaaaaaatatgactggctagtgtaggtcatttgttgaggttcactcatggtccctttaattt |
225 |
Q |
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| T |
34823081 |
gtttttttttcctaaaagatatgaccggctagagcaggtcatttgttgaggttcactcatgat-cctttaattt |
34823153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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